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Report for CCDS34535.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34535.1 Public Homo sapiens 6 ARHGAP18 24 110 108 CCDS HistoryNCBI Gene:93663Re-query CCDS DB by CCDS ID:34535.1Re-query CCDS DB by GeneID:93663See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34535.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000368149.3 ENSP00000357131.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000368149.3Link to Ensembl Protein Viewer:ENSP00000357131.2Re-query CCDS DB by Nucleotide ID:ENST00000368149Re-query CCDS DB by Protein ID:ENSP00000357131
Original member Current member NCBI NM_033515.3 NP_277050.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_033515.3Link to Protein Sequence:NP_277050.2Re-query CCDS DB by Nucleotide ID:NM_033515Re-query CCDS DB by Protein ID:NP_277050Link to BLAST:NP_277050.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_277050.2 663 Q8N392-1 663 100% 0 0

Chromosomal Locations for CCDS 34535.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 129578513 129578604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 129580070 129580131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 129583988 129584112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 129599216 129599356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 129600642 129600848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 129605877 129605959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 129607893 129608052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 129611533 129611610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 129616212 129616303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 129618687 129618852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 129629353 129629522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 129634042 129634105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 129638394 129638629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 129641816 129642018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 129710024 129710136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1992 nt):
ATGAGCTGGCTCTCCAGTTCCCAGGGAGTGGTACTAACAGCCTACCACCCCAGCGGCAAGGACCAGACCG
TCGGGAACAGCCATGCAAAGGCAGGGGAGGAAGCCACCTCGAGTCGCAGATATGGCCAGTACACTATGAA
CCAGGAAAGCACCACCATCAAAGTTATGGAGAAGCCTCCATTTGATCGATCAATTTCCCAGGATTCTTTG
GATGAACTATCTATGGAAGACTATTGGATAGAACTAGAAAACATCAAGAAATCTAGTGAAAACAGCCAAG
AAGATCAAGAGGTGGTTGTTGTCAAAGAGCCTGATGAGGGAGAATTGGAAGAAGAGTGGCTTAAAGAGGC
CGGTTTATCCAATCTCTTCGGAGAGTCTGCTGGAGATCCACAGGAAAGCATTGTGTTTTTATCAACATTG
ACGCGGACCCAGGCAGCAGCAGTTCAGAAGCGAGTAGAGACGGTCTCCCAGACCTTGAGGAAAAAAAACA
AACAGTACCAGATTCCTGACGTCAGAGACATATTTGCTCAACAGAGAGAATCAAAAGAAACAGCTCCAGG
TGGCACTGAATCGCAGTCACTTAGAACAAATGAAAACAAATACCAAGGAAGAGATGACGAGGCATCTAAC
CTTGTTGGTGAAGAGAAGCTGATCCCACCTGAGGAGACGCCTGCCCCTGAAACAGACATCAACCTGGAGG
TATCATTTGCCGAGCAAGCACTCAATCAGAAAGAGAGCTCCAAGGAGAAAATCCAGAAGAGCAAAGGCGA
TGATGCCACATTACCTAGTTTCAGATTGCCAAAAGACAAAACGGGTACCACAAGGATTGGTGACCTCGCA
CCCCAGGACATGAAGAAAGTTTGCCATTTAGCCCTAATTGAGCTGACTGCCCTCTATGATGTATTGGGTA
TTGAGCTGAAACAACAAAAAGCTGTGAAAATCAAAACAAAAGATTCTGGTCTTTTTTGCGTTCCATTGAC
AGCGCTATTAGAACAAGATCAGAGGAAAGTACCAGGAATGCGAATACCCTTGATCTTTCAAAAACTGATT
TCTCGAATTGAAGAGAGAGGTTTGGAAACAGAAGGCCTCTTACGGATCCCTGGAGCTGCCATTAGAATCA
AGAATCTTTGCCAAGAACTAGAAGCAAAGTTTTATGAAGGGACTTTTAATTGGGAAAGTGTCAAACAGCA
TGATGCCGCCAGCCTGCTGAAGCTCTTCATTCGGGAGTTGCCCCAGCCACTGCTCAGTGTGGAGTATCTC
AAAGCCTTTCAGGCTGTCCAGAATCTTCCAACCAAGAAGCAGCAACTACAGGCTTTGAACCTTCTTGTCA
TCCTCCTACCTGATGCAAACAGGGACACACTGAAGGCCCTTCTTGAATTTCTCCAAAGAGTAATAGATAA
TAAAGAAAAAAATAAAATGACAGTCATGAATGTAGCAATGGTCATGGCCCCGAATCTCTTTATGTGTCAT
GCATTGGGATTGAAGTCCAGTGAACAGCGAGAATTTGTAATGGCAGCTGGGACAGCAAATACCATGCACT
TATTGATTAAGTACCAAAAACTTCTGTGGACAATTCCCAAGTTTATTGTAAACCAAGTGAGGAAGCAAAA
CACGGAAAATCATAAAAAGGATAAAAGAGCCATGAAGAAATTGCTGAAGAAAATGGCTTATGACCGAGAA
AAATATGAAAAGCAAGATAAGAGTACAAATGATGCTGACGTTCCTCAGGGAGTGATTCGAGTGCAAGCTC
CCCATCTTTCGAAAGTTTCCATGGCAATACAGCTAACTGAAGAACTAAAAGCCAGTGATGTACTTGCCAG
GTTTCTCAGCCAAGAAAGTGGGGTTGCCCAGACTCTCAAGAAAGGAGAAGTTTTTTTGTATGAAATTGGA
GGAAATATTGGGGAACGCTGCCTTGATGATGACACTTACATGAAGGATTTATATCAGCTTAACCCAAATG
CTGAGTGGGTTATAAAGTCAAAGCCATTGTAG

Translation (663 aa):
MSWLSSSQGVVLTAYHPSGKDQTVGNSHAKAGEEATSSRRYGQYTMNQESTTIKVMEKPPFDRSISQDSL
DELSMEDYWIELENIKKSSENSQEDQEVVVVKEPDEGELEEEWLKEAGLSNLFGESAGDPQESIVFLSTL
TRTQAAAVQKRVETVSQTLRKKNKQYQIPDVRDIFAQQRESKETAPGGTESQSLRTNENKYQGRDDEASN
LVGEEKLIPPEETPAPETDINLEVSFAEQALNQKESSKEKIQKSKGDDATLPSFRLPKDKTGTTRIGDLA
PQDMKKVCHLALIELTALYDVLGIELKQQKAVKIKTKDSGLFCVPLTALLEQDQRKVPGMRIPLIFQKLI
SRIEERGLETEGLLRIPGAAIRIKNLCQELEAKFYEGTFNWESVKQHDAASLLKLFIRELPQPLLSVEYL
KAFQAVQNLPTKKQQLQALNLLVILLPDANRDTLKALLEFLQRVIDNKEKNKMTVMNVAMVMAPNLFMCH
ALGLKSSEQREFVMAAGTANTMHLLIKYQKLLWTIPKFIVNQVRKQNTENHKKDKRAMKKLLKKMAYDRE
KYEKQDKSTNDADVPQGVIRVQAPHLSKVSMAIQLTEELKASDVLARFLSQESGVAQTLKKGEVFLYEIG
GNIGERCLDDDTYMKDLYQLNPNAEWVIKSKPL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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