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Report for CCDS34736.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34736.1 Public Homo sapiens 7 IFRD1 24 110 108 CCDS HistoryNCBI Gene:3475Re-query CCDS DB by CCDS ID:34736.1Re-query CCDS DB by GeneID:3475See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34736.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000005558.8 ENSP00000005558.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000005558.8Link to Ensembl Protein Viewer:ENSP00000005558.4Re-query CCDS DB by Nucleotide ID:ENST00000005558Re-query CCDS DB by Protein ID:ENSP00000005558
Original member Current member EBI ENST00000403825.8 ENSP00000384477.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000403825.8Link to Ensembl Protein Viewer:ENSP00000384477.3Re-query CCDS DB by Nucleotide ID:ENST00000403825Re-query CCDS DB by Protein ID:ENSP00000384477
Original member Current member EBI ENST00000676282.1 ENSP00000501830.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000676282.1Link to Ensembl Protein Viewer:ENSP00000501830.1Re-query CCDS DB by Nucleotide ID:ENST00000676282Re-query CCDS DB by Protein ID:ENSP00000501830
Original member Current member EBI ENST00000675578.1 ENSP00000502336.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000675578.1Link to Ensembl Protein Viewer:ENSP00000502336.1Re-query CCDS DB by Nucleotide ID:ENST00000675578Re-query CCDS DB by Protein ID:ENSP00000502336
Original member Current member NCBI NM_001007245.3 NP_001007246.1 Accepted alive Link to Nucleotide Sequence:NM_001007245.3Link to Protein Sequence:NP_001007246.1Re-query CCDS DB by Nucleotide ID:NM_001007245Re-query CCDS DB by Protein ID:NP_001007246Link to BLAST:NP_001007246.1
Original member Current member NCBI NM_001550.4 NP_001541.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001550.4Link to Protein Sequence:NP_001541.2Re-query CCDS DB by Nucleotide ID:NM_001550Re-query CCDS DB by Protein ID:NP_001541Link to BLAST:NP_001541.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001007246.1 451 O00458-1 451 100% 0 0
NP_001541.2 451 O00458-1 451 100% 0 0

Chromosomal Locations for CCDS 34736.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 112450689 112450782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 112455763 112455867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 112456002 112456086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 112456914 112457038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 112458861 112459018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 112461866 112461916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 112462001 112462179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 112462270 112462378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 112467981 112468115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 112472219 112472347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 112472766 112472861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 112475430 112475519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1356 nt):
ATGCCGAAGAACAAGAAGCGGAACACTCCCCACCGCGGTAGCAGTGCTGGCGGCGGCGGGTCAGGAGCAG
CCGCAGCGACGGCGGCGACAGCAGGTGGCCAGCATCGAAATGTTCAGCCTTTTAGTGATGAAGATGCATC
AATTGAAACAATGAGCCATTGCAGTGGTTATAGCGATCCTTCCAGTTTTGCTGAAGATGGACCAGAAGTC
CTTGATGAGGAAGGAACTCAAGAAGACCTAGAGTACAAGTTGAAGGGATTAATTGACCTAACCCTGGATA
AGAGTGCGAAGACAAGGCAAGCAGCTCTTGAAGGTATTAAAAATGCACTGGCTTCAAAAATGCTGTATGA
ATTTATTCTGGAAAGGAGAATGACTTTAACTGATAGCATTGAACGCTGCCTGAAAAAAGGTAAGAGTGAT
GAGCAACGTGCAGCTGCAGCGTTAGCATCTGTTCTTTGTATTCAGCTGGGCCCTGGAATTGAAAGTGAAG
AGATTTTGAAAACTCTTGGACCAATCCTAAAGAAAATCATTTGTGATGGGTCAGCTAGTATGCAGGCTAG
GCAAACTTGTGCAACTTGCTTTGGTGTTTGCTGTTTTATTGCCACAGATGACATTACTGAACTATACTCA
ACTCTGGAATGTTTGGAAAATATCTTCACTAAATCCTATCTCAAAGAGAAAGACACTACTGTTATTTGCA
GCACTCCTAATACAGTGCTTCATATCAGCTCTCTTCTTGCATGGACACTACTGCTGACCATATGCCCAAT
CAATGAAGTGAAGAAAAAGCTTGAGATGCATTTCCATAAGCTTCCAAGCCTCCTCTCTTGTGATGATGTA
AACATGAGAATAGCTGCTGGTGAATCTTTGGCACTTCTCTTTGAATTGGCCAGAGGAATAGAGAGTGACT
TTTTTTATGAAGACATGGAGTCCTTGACGCAGATGCTTAGGGCCTTGGCAACAGATGGAAATAAACACCG
GGCCAAAGTGGACAAGAGAAAGCAGCGGTCAGTTTTCAGAGATGTCCTGAGGGCAGTGGAGGAACGGGAT
TTTCCAACAGAAACCATTAAATTTGGTCCTGAACGCATGTATATTGATTGCTGGGTAAAAAAACACACCT
ATGACACCTTTAAGGAGGTTCTTGGATCAGGGATGCAGTACCACTTGCAGTCAAATGAATTCCTTCGAAA
TGTATTTGAACTTGGACCCCCAGTGATGCTTGATGCTGCAACGCTTAAAACGATGAAGATTTCTCGTTTC
GAAAGGCATTTATATAACTCTGCAGCCTTCAAAGCTCGAACCAAAGCTAGAAGCAAATGTCGAGATAAGA
GAGCAGATGTTGGAGAATTCTTCTAG

Translation (451 aa):
MPKNKKRNTPHRGSSAGGGGSGAAAATAATAGGQHRNVQPFSDEDASIETMSHCSGYSDPSSFAEDGPEV
LDEEGTQEDLEYKLKGLIDLTLDKSAKTRQAALEGIKNALASKMLYEFILERRMTLTDSIERCLKKGKSD
EQRAAAALASVLCIQLGPGIESEEILKTLGPILKKIICDGSASMQARQTCATCFGVCCFIATDDITELYS
TLECLENIFTKSYLKEKDTTVICSTPNTVLHISSLLAWTLLLTICPINEVKKKLEMHFHKLPSLLSCDDV
NMRIAAGESLALLFELARGIESDFFYEDMESLTQMLRALATDGNKHRAKVDKRKQRSVFRDVLRAVEERD
FPTETIKFGPERMYIDCWVKKHTYDTFKEVLGSGMQYHLQSNEFLRNVFELGPPVMLDAATLKTMKISRF
ERHLYNSAAFKARTKARSKCRDKRADVGEFF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
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