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Report for CCDS34881.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34881.1 Public Homo sapiens 8 RAB11FIP1 24 110 108 CCDS HistoryNCBI Gene:80223Re-query CCDS DB by CCDS ID:34881.1Re-query CCDS DB by GeneID:80223See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34881.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000287263.8 ENSP00000287263.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000287263.8Link to Ensembl Protein Viewer:ENSP00000287263.4Re-query CCDS DB by Nucleotide ID:ENST00000287263Re-query CCDS DB by Protein ID:ENSP00000287263
Original member Current member NCBI NM_025151.5 NP_079427.4 Accepted alive Link to Nucleotide Sequence:NM_025151.5Link to Protein Sequence:NP_079427.4Re-query CCDS DB by Nucleotide ID:NM_025151Re-query CCDS DB by Protein ID:NP_079427Link to BLAST:NP_079427.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079427.4 649 Q6WKZ4-3 649 100% 0 0

Chromosomal Locations for CCDS 34881.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 37862895 37863113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 37870420 37870528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 37874515 37875322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 37877109 37877551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 37899071 37899441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1950 nt):
ATGTCCCTAATGGTCTCGGCTGGCCGGGGCCTGGGGGCCGTGTGGTCCCCAACCCACGTGCAGGTGACGG
TGCTGCAGGCGCGGGGCCTGCGGGCCAAGGGCCCCGGGGGCACGAGCGACGCGTACGCGGTGATCCAGGT
GGGCAAGGAGAAGTACGCCACCTCCGTGTCGGAGCGCAGCCTGGGCGCGCCCGTGTGGCGCGAGGAGGCC
ACCTTCGAGCTGCCATCGCTGCTGTCCTCCGGACCCGCGGCCGCCGCCACCCTGCAGCTCACCGTGCTGC
ACCGCGCGCTGCTCGGCCTCGACAAGTTCCTGGGCCGCGCCGAGGTGGACCTGCGGGATCTGCACCGCGA
CCAGGGCCGCAGGAAGACGCAGTGGTATAAGTTGAAATCCAAACCAGGAAAGAAGGACAAGGAGCGAGGA
GAAATTGAGGTTGACATCCAGTTTATGAGAAACAACATGACTGCCAGCATGTTTGACCTTTCTATGAAAG
ACAAGTCTCGGAATCCATTTGGAAAGCTGAAGGACAAGATCAAGGGGAAGAATAAGGACAGTGGGTCAGA
CACCGCCTCCGCCATCATCCCTAGCACGACACCTTCGGTCGACAGTGATGATGAGTCTGTGGTTAAAGAC
AAGAAAAAGAAATCAAAGATCAAGACCTTACTTTCCAAGTCAAATTTGCAGAAGACGCCTCTTTCCCAGT
CCATGTCTGTCCTGCCGACTTCAAAGCCAGAAAAAGTGCTGCTTCGTCCCGGAGACTTTCAGTCCCAGTG
GGATGAAGATGACAATGAGGATGAGTCCTCCTCGGCCTCGGATGTCATGTCTCACAAGAGAACAGCGAGT
ACGGATCTTAAGCAACTGAACCAGGTCAACTTTACCCTTCCCAAGAAGGAAGGACTTTCCTTTCTTGGTG
GCCTTCGGTCTAAGAATGATGTCCTTTCCCGCTCTAATGTCTGCATCAATGGGAACCATGTTTACCTGGA
GCAGCCAGAAGCCAAGGGTGAGATCAAGGATAGCAGCCCGTCCTCCTCCCCATCCCCCAAGGGCTTCAGA
AAGAAGCATTTGTTCTCTTCTACAGAGAACCTGGCGGCTGGGTCTTGGAAGGAGCCTGCTGAAGGAGGTG
GGCTGTCTTCTGACAGGCAGCTCTCCGAATCTTCCACCAAGGACTCCTTGAAGTCTATGACCCTGCCGTC
CTACCGACCTGCCCCACTGGTCAGTGGGGACCTCAGGGAAAACATGGCCCCCGCAAACTCAGAGGCCACA
AAAGAAGCTAAGGAGAGCAAGAAGCCAGAGAGCAGGAGGTCCTCTTTGCTGTCTCTGATGACGGGGAAGA
AGGATGTGGCTAAGGGCAGTGAAGGTGAAAACCCTCTCACGGTCCCAGGGAGGGAGAAGGAAGGCATGCT
GATGGGGGTTAAGCCGGGGGAGGACGCATCGGGGCCTGCTGAAGACCTTGTGAGAAGATCTGAGAAAGAT
ACTGCAGCTGTTGTCTCCAGACAGGGCAGCTCCCTGAACCTCTTTGAAGATGTGCAGATCACAGAACCAG
AAGCTGAGCCAGAGTCCAAGTCTGAACCGAGACCTCCAATTTCCTCTCCGAGGGCTCCCCAGACCAGAGC
TGTCAAGCCCCGACTTCATCCTGTGAAGCCAATGAATGCAATGGCCACCAAGGTTGCTAACTGCAGCTTG
GGAACTGCCACCATCATCAGTGAGAACTTGAACAATGAGGTCATGATGAAGAAATACAGCCCCTCGGACC
CTGCATTTGCATATGCGCAGCTGACCCACGATGAGCTGATTCAGCTGGTCCTCAAACAGAAGGAAACGAT
AAGCAAGAAGGAGTTCCAGGTCCGCGAGCTGGAAGACTACATTGACAACCTGCTTGTCAGGGTCATGGAA
GAAACCCCCAATATCCTCCGCATCCCGACTCAGGTTGGCAAAAAAGCAGGAAAGATGTAA

Translation (649 aa):
MSLMVSAGRGLGAVWSPTHVQVTVLQARGLRAKGPGGTSDAYAVIQVGKEKYATSVSERSLGAPVWREEA
TFELPSLLSSGPAAAATLQLTVLHRALLGLDKFLGRAEVDLRDLHRDQGRRKTQWYKLKSKPGKKDKERG
EIEVDIQFMRNNMTASMFDLSMKDKSRNPFGKLKDKIKGKNKDSGSDTASAIIPSTTPSVDSDDESVVKD
KKKKSKIKTLLSKSNLQKTPLSQSMSVLPTSKPEKVLLRPGDFQSQWDEDDNEDESSSASDVMSHKRTAS
TDLKQLNQVNFTLPKKEGLSFLGGLRSKNDVLSRSNVCINGNHVYLEQPEAKGEIKDSSPSSSPSPKGFR
KKHLFSSTENLAAGSWKEPAEGGGLSSDRQLSESSTKDSLKSMTLPSYRPAPLVSGDLRENMAPANSEAT
KEAKESKKPESRRSSLLSLMTGKKDVAKGSEGENPLTVPGREKEGMLMGVKPGEDASGPAEDLVRRSEKD
TAAVVSRQGSSLNLFEDVQITEPEAEPESKSEPRPPISSPRAPQTRAVKPRLHPVKPMNAMATKVANCSL
GTATIISENLNNEVMMKKYSPSDPAFAYAQLTHDELIQLVLKQKETISKKEFQVRELEDYIDNLLVRVME
ETPNILRIPTQVGKKAGKM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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