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Report for CCDS34902.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34902.1 Public Homo sapiens 8 PPP1R42 24 110 108 CCDS HistoryNCBI Gene:286187Re-query CCDS DB by CCDS ID:34902.1Re-query CCDS DB by GeneID:286187See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34902.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000324682.5 ENSP00000315035.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000324682.5Link to Ensembl Protein Viewer:ENSP00000315035.5Re-query CCDS DB by Nucleotide ID:ENST00000324682Re-query CCDS DB by Protein ID:ENSP00000315035
Original member Current member NCBI NM_001013626.4 NP_001013648.1 Accepted alive Link to Nucleotide Sequence:NM_001013626.4Link to Protein Sequence:NP_001013648.1Re-query CCDS DB by Nucleotide ID:NM_001013626Re-query CCDS DB by Protein ID:NP_001013648Link to BLAST:NP_001013648.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001013648.1 228 Q7Z4L9-2 228 100% 0 0

Chromosomal Locations for CCDS 34902.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 66988383 66988517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 67010715 67010831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 67012958 67013096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 67014426 67014592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 67017619 67017747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (687 nt):
ATGGTTCGACTGACCTTGGATCTAATTGCCAGAAACAGCAATCTTAAACCCCGAAAAGAAGAAACCATTT
CACAGTGCCTGAAGAAAATAACTCATATAAATTTTTCAGACAAAAATATAGATGCAATTGAAGACCTCTC
TCTTTGCAAAAATCTTAGTGTTTTATATTTATATGATAATTGTATTAGTCAAATCACTAACCTGAATTAT
GCCACAAATCTGACCCACTTGTACCTACAAAACAATTGTATTTCATGTATAGAGAACCTCAGGTCATTAA
AGAAACTGGAAAAACTGTATCTGGGAGGCAATTACATTGCTGTCATAGAAGGTTTAGAAGGATTAGGAGA
ACTAAGAGAGCTTCATGTTGAGAATCAGAGGCTTCCCCTTGGGGAAAAGCTTCTGTTTGATCCAAGAACT
CTTCATTCTCTGGCAAAATCCCTCTGTATATTGAATATCAGCAATAATAATATTGATGACATTACAGACT
TAGAACTACTAGAGAATCTTAATCAGCTCATAGCCGTTGACAACCAACTTCTGCATGTGAAGGATTTGGA
GTTTTTACTGAACAAGTTGATGAAGCTGTGGAAAATTGATCTAAATGGAAATCCTGTTTGTCTCAAACCA
AAATACAGGGACAGACTGATATTGGTGTCCAAATCACTGGGTACATATTTATATTAA

Translation (228 aa):
MVRLTLDLIARNSNLKPRKEETISQCLKKITHINFSDKNIDAIEDLSLCKNLSVLYLYDNCISQITNLNY
ATNLTHLYLQNNCISCIENLRSLKKLEKLYLGGNYIAVIEGLEGLGELRELHVENQRLPLGEKLLFDPRT
LHSLAKSLCILNISNNNIDDITDLELLENLNQLIAVDNQLLHVKDLEFLLNKLMKLWKIDLNGNPVCLKP
KYRDRLILVSKSLGTYLY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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