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Report for CCDS35305.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35305.2 Public Homo sapiens X VCF2 24 110 108 CCDS HistoryNCBI Gene:90736Re-query CCDS DB by CCDS ID:35305.2Re-query CCDS DB by GeneID:90736See the combined annotation on chromosome X in Sequence Viewer

Public Note for CCDS 35305.1
The coding region has been updated to represent an alternative splice site that is more supported by the available transcript and homology data.

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 35305.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000358460.8 ENSP00000364101.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000358460.8Link to Ensembl Protein Viewer:ENSP00000364101.3Re-query CCDS DB by Nucleotide ID:ENST00000358460Re-query CCDS DB by Protein ID:ENSP00000364101
Original member Current member NCBI NM_138362.4 NP_612371.2 Accepted alive Link to Nucleotide Sequence:NM_138362.4Link to Protein Sequence:NP_612371.2Re-query CCDS DB by Nucleotide ID:NM_138362Re-query CCDS DB by Protein ID:NP_612371Link to BLAST:NP_612371.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_612371.2 115 Q5XKR9-1 115 100% 0 0

Chromosomal Locations for CCDS 35305.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 55143779 55143875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 55146181 55146311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 55159129 55159228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 55161137 55161156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (348 nt):
ATGGGAGGCTGCCCTGTACGGAAAAGAAGAAGAAATGGCAGTAAAGAGGGCAACCATCATTCCACCCAGC
CCAAAAGGAATAAGAGAAACCCTATCTTTCAGGATTCTCAAGATACAGAGTTTTCATGGAGTGATAATGA
AAGGAGCAGCAGCCGCATTAATATCCCAGAGAGAGCAAGTGGACCAGAAGGCAACTTAAACCAGATTGTT
ACTGAACCCGATGCAAACTTTCCCCAGTTCTTGCATGAGGGATTGTCTAAACCTGTTTATGTCATAAACT
GGTTTATGTCCTTTGGTCCTGAAATAAAACTCAATACTTCACAGCAGGGAAGGAACCAAGCTGTTTAA

Translation (115 aa):
MGGCPVRKRRRNGSKEGNHHSTQPKRNKRNPIFQDSQDTEFSWSDNERSSSRINIPERASGPEGNLNQIV
TEPDANFPQFLHEGLSKPVYVINWFMSFGPEIKLNTSQQGRNQAV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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