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Report for CCDS35307.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35307.1 Public Homo sapiens X PAGE3 24 110 108 CCDS HistoryNCBI Gene:139793Re-query CCDS DB by CCDS ID:35307.1Re-query CCDS DB by GeneID:139793See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 35307.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000374951.6 ENSP00000364089.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000374951.6Link to Ensembl Protein Viewer:ENSP00000364089.1Re-query CCDS DB by Nucleotide ID:ENST00000374951Re-query CCDS DB by Protein ID:ENSP00000364089
Original member Current member EBI ENST00000519203.1 ENSP00000429571.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000519203.1Link to Ensembl Protein Viewer:ENSP00000429571.1Re-query CCDS DB by Nucleotide ID:ENST00000519203Re-query CCDS DB by Protein ID:ENSP00000429571
Original member Current member NCBI NM_001017931.3 NP_001017931.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001017931.3Link to Protein Sequence:NP_001017931.3Re-query CCDS DB by Nucleotide ID:NM_001017931Re-query CCDS DB by Protein ID:NP_001017931Link to BLAST:NP_001017931.3
Original member Current member NCBI NM_001171252.2 NP_001164723.2 Accepted alive Link to Nucleotide Sequence:NM_001171252.2Link to Protein Sequence:NP_001164723.2Re-query CCDS DB by Nucleotide ID:NM_001171252Re-query CCDS DB by Protein ID:NP_001164723Link to BLAST:NP_001164723.2
Original member Current member NCBI NM_001303613.2 NP_001290542.2 Accepted alive Link to Nucleotide Sequence:NM_001303613.2Link to Protein Sequence:NP_001290542.2Re-query CCDS DB by Nucleotide ID:NM_001303613Re-query CCDS DB by Protein ID:NP_001290542Link to BLAST:NP_001290542.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001017931.3 113 Q5JUK9 113 100% 0 0
NP_001164723.2 113 Q5JUK9 113 100% 0 0
NP_001290542.2 113 Q5JUK9 113 100% 0 0

Chromosomal Locations for CCDS 35307.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 55258506 55258528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 55260534 55260659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 55263251 55263359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 55263820 55263903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (342 nt):
ATGAGTGGACATCAAAGAACAAGATCCAGATCTAGAGAAAGAAGAGATGATCAAGACTCTAATCATCCAG
TAGGGGCTGTGGTTGCCCAGGAGCTGCCCAGTAATGACCAGCTTCAACAAGAGGAACCACCAATTGAAAG
TCAGGATTATACACCTGGTCAAGAGAGAGACGAGGGAGCACTGGACTTCCAAGTGCTAGGCCTGGCAGCC
TATCTCTGGGAACTGACTCGGTCAAAGACTGGGGGTGAACGTGGAGATGGTCCTAATGTCAAGGGAGAAT
TTCTGCCAAATCTGGAGCCTGTTAAAATACCAGAAGCAGGTGAAGGGCAACCATCGGTTTAA

Translation (113 aa):
MSGHQRTRSRSRERRDDQDSNHPVGAVVAQELPSNDQLQQEEPPIESQDYTPGQERDEGALDFQVLGLAA
YLWELTRSKTGGERGDGPNVKGEFLPNLEPVKIPEAGEGQPSV


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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