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Report for CCDS35496.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35496.1 Public Homo sapiens 6 TRMT11 24 110 108 CCDS HistoryNCBI Gene:60487Re-query CCDS DB by CCDS ID:35496.1Re-query CCDS DB by GeneID:60487See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35496.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000334379.11 ENSP00000333934.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000334379.11Link to Ensembl Protein Viewer:ENSP00000333934.5Re-query CCDS DB by Nucleotide ID:ENST00000334379Re-query CCDS DB by Protein ID:ENSP00000333934
Original member Current member NCBI NM_001031712.3 NP_001026882.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001031712.3Link to Protein Sequence:NP_001026882.2Re-query CCDS DB by Nucleotide ID:NM_001031712Re-query CCDS DB by Protein ID:NP_001026882Link to BLAST:NP_001026882.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001026882.2 463 Q7Z4G4-1 463 100% 0 0

Chromosomal Locations for CCDS 35496.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 125986551 125986622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125993757 125993822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125995967 125996040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125998053 125998134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125998223 125998315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125998550 125998684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125999457 125999613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 126008392 126008472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 126011253 126011417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 126012771 126012852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 126012970 126013101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 126021160 126021280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 126038705 126038836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1392 nt):
ATGGCGCTGTCGTGTACCCTTAACAGGTATCTGCTCCTCATGGCGCAGGAGCATCTGGAGTTCCGCCTGC
CGGAAATAAAGTCTTTGCTTTTGCTTTTTGGAGGTCAGTTTGCCAGCAGTCAAGAAACTTATGGAAAGTC
ACCATTTTGGATTCTTAGCATTCCCTCTGAAGATATTGCAAGAAATTTGATGAAACGGACAGTGTGTGCC
AAGTCTATATTTGAACTATGGGGTCATGGACAATCTCCTGAGGAGCTGTACAGTTCTCTTAAAAACTACC
CTGTGGAGAAGATGGTTCCATTTCTACATTCGGACTCTACATATAAAATAAAGATTCACACTTTTAATAA
GACATTGACACAAGAAGAGAAAATCAAGCGAATAGATGCACTTGAATTTCTGCCATTTGAAGGAAAAGTG
AATTTAAAGAAACCGCAACATGTATTTTCTGTTTTGGAGGATTATGGTTTAGACCCAAACTGCATCCCTG
AGAATCCACATAATATTTATTTTGGTAGATGGATTGCAGATGGACAGAGAGAGCTTATTGAGTCATACAG
TGTCAAAAAGAGACACTTTATTGGAAATACAAGTATGGATGCTGGTTTGTCATTCATTATGGCTAACCAT
GGAAAAGTGAAAGAAAATGATATTGTCTTTGATCCATTTGTTGGAACAGGTGGCCTGCTGATAGCATGTG
CTCATTTTGGTGCATATGTGTATGGGACAGACATAGACTACAACACAGTTCATGGCTTGGGAAAGGCTAC
TAGGAAAAACCAGAAGTGGAGAGGACCAGATGAAAACATTAGGGCCAATCTTCGTCAATATGGTTTAGAG
AAGTATTACCTTGATGTCCTGGTTTCAGATGCATCTAAACCTTCCTGGAGGAAGGGCACATATTTTGATG
CAATCATTACTGATCCTCCATATGGTATCAGAGAATCTACAAGAAGAACAGGTTCACAGAAGGAGATACC
AAAGGGGATAGAAAAATGGGAAAAATGTCCAGAAAGCCATGTTCCTGTTTCCTTGAGTTATCATCTGAGT
GATATGTTTCTTGACCTGTTAAACTTCGCAGCTGAGACCCTCGTTTTAGGTGGAAGACTAGTCTATTGGT
TACCGGTGTATACGCCAGAATACACTGAAGAGATGGTGCCTTGGCACCCTTGCCTGGAACTCGTTAGCAA
CTGCGAGCAGAAGCTTTCCAGTCACACATCAAGGCGCTTGATCACAATGGAAAAGGTGAAGAAATTTGAG
AATCGGGACCAGTATTCACATCTGCTAAGTGATCATTTTCTGCCATACCAAGGTCATAATTCCTTCCGTG
AGAAATATTTTAGTGGGGTAACAAAAAGAATTGCCAAGGAAGAAAAATCCACCCAGGAATGA

Translation (463 aa):
MALSCTLNRYLLLMAQEHLEFRLPEIKSLLLLFGGQFASSQETYGKSPFWILSIPSEDIARNLMKRTVCA
KSIFELWGHGQSPEELYSSLKNYPVEKMVPFLHSDSTYKIKIHTFNKTLTQEEKIKRIDALEFLPFEGKV
NLKKPQHVFSVLEDYGLDPNCIPENPHNIYFGRWIADGQRELIESYSVKKRHFIGNTSMDAGLSFIMANH
GKVKENDIVFDPFVGTGGLLIACAHFGAYVYGTDIDYNTVHGLGKATRKNQKWRGPDENIRANLRQYGLE
KYYLDVLVSDASKPSWRKGTYFDAIITDPPYGIRESTRRTGSQKEIPKGIEKWEKCPESHVPVSLSYHLS
DMFLDLLNFAAETLVLGGRLVYWLPVYTPEYTEEMVPWHPCLELVSNCEQKLSSHTSRRLITMEKVKKFE
NRDQYSHLLSDHFLPYQGHNSFREKYFSGVTKRIAKEEKSTQE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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