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Report for CCDS35547.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35547.1 Public Mus musculus 1 Il1r1 23 108 98 CCDS HistoryNCBI Gene:16177Re-query CCDS DB by CCDS ID:35547.1Re-query CCDS DB by GeneID:16177See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35547.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027241.10 ENSMUSP00000027241.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027241.10Link to Ensembl Protein Viewer:ENSMUSP00000027241.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000027241Re-query CCDS DB by Protein ID:ENSMUSP00000027241
Original member NCBI NM_008362.2 NP_032388.1 Updated not alive Link to Nucleotide Sequence:NM_008362.2Link to Protein Sequence:NP_032388.1Re-query CCDS DB by Nucleotide ID:NM_008362Re-query CCDS DB by Protein ID:NP_032388
Current member NCBI NM_008362.3 NP_032388.1 Accepted alive Link to Nucleotide Sequence:NM_008362.3Link to Protein Sequence:NP_032388.1Re-query CCDS DB by Nucleotide ID:NM_008362Re-query CCDS DB by Protein ID:NP_032388Link to BLAST:NP_032388.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032388.1 576 P13504-1 576 100% 0 0

Chromosomal Locations for CCDS 35547.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 40225304 40225306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40282233 40282296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40293120 40293357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40293458 40293647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40294758 40294926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40297909 40297974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40300760 40300877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40302278 40302429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40310286 40310429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40312347 40312514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40312975 40313393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1731 nt):
ATGGAGAATATGAAAGTGCTACTGGGGCTCATTTGTCTCATGGTGCCTCTGCTGTCGCTGGAGATTGACG
TATGTACAGAATATCCAAATCAGATCGTTTTGTTTTTATCTGTAAATGAAATTGATATTCGCAAGTGTCC
TCTTACTCCAAATAAAATGCACGGCGACACCATAATTTGGTACAAGAATGACAGCAAGACCCCCATATCA
GCGGACCGGGACTCCAGGATTCATCAGCAGAATGAACATCTTTGGTTTGTACCTGCCAAGGTGGAGGACT
CAGGATATTACTATTGTATAGTAAGAAACTCAACTTACTGCCTCAAAACTAAAGTAACCGTAACTGTGTT
AGAGAATGACCCTGGCTTGTGTTACAGCACACAGGCCACCTTCCCACAGCGGCTCCACATTGCCGGGGAT
GGAAGTCTTGTGTGCCCTTATGTGAGTTATTTTAAAGATGAAAATAATGAGTTACCCGAGGTCCAGTGGT
ATAAGAACTGTAAACCTCTGCTTCTTGACAACGTGAGCTTCTTCGGAGTAAAAGATAAACTGTTGGTGAG
GAATGTGGCTGAAGAGCACAGAGGGGACTATATATGCCGTATGTCCTATACGTTCCGGGGGAAGCAATAT
CCGGTCACACGAGTAATACAATTTATCACAATAGATGAAAACAAGAGGGACAGACCTGTTATCCTGAGCC
CTCGGAATGAGACGATCGAAGCTGACCCAGGATCAATGATACAACTGATCTGCAACGTCACGGGCCAGTT
CTCAGACCTTGTCTACTGGAAGTGGAATGGATCAGAAATTGAATGGAATGATCCATTTCTAGCTGAAGAC
TATCAATTTGTGGAACATCCTTCAACCAAAAGAAAATACACACTCATTACAACACTTAACATTTCAGAAG
TTAAAAGCCAGTTTTATCGCTATCCGTTTATCTGTGTTGTTAAGAACACAAATATTTTTGAGTCGGCGCA
TGTGCAGTTAATATACCCAGTCCCTGACTTCAAGAATTACCTCATCGGGGGCTTTATCATCCTCACGGCT
ACAATTGTATGCTGTGTGTGCATCTATAAAGTCTTCAAGGTTGACATAGTGCTTTGGTACAGGGACTCCT
GCTCTGGTTTTCTTCCTTCAAAAGCTTCAGATGGAAAGACATACGATGCCTATATTCTTTATCCCAAGAC
CCTGGGAGAGGGGTCCTTCTCAGACTTAGATACTTTTGTTTTTAAACTGTTGCCTGAGGTCTTGGAGGGA
CAGTTTGGATACAAGCTGTTCATTTATGGAAGGGATGACTATGTTGGAGAAGATACCATCGAGGTTACTA
ATGAAAATGTAAAGAAAAGCAGGAGGCTGATTATCATTCTAGTGAGAGATATGGGAGGCTTCAGCTGGCT
GGGCCAGTCATCTGAAGAGCAAATAGCCATATACAATGCTCTCATCCAGGAAGGAATTAAAATCGTCCTG
CTTGAGTTGGAGAAAATCCAAGACTATGAGAAAATGCCAGATTCTATTCAGTTCATTAAGCAGAAACACG
GAGTCATTTGCTGGTCAGGAGACTTTCAAGAAAGACCACAGTCTGCAAAGACCAGGTTCTGGAAAAACTT
AAGATACCAGATGCCAGCCCAACGGAGATCACCATTGTCTAAACACCGCTTACTAACCCTGGATCCTGTG
CGGGACACTAAGGAGAAACTGCCGGCAGCAACACACTTACCACTCGGCTAG

Translation (576 aa):
MENMKVLLGLICLMVPLLSLEIDVCTEYPNQIVLFLSVNEIDIRKCPLTPNKMHGDTIIWYKNDSKTPIS
ADRDSRIHQQNEHLWFVPAKVEDSGYYYCIVRNSTYCLKTKVTVTVLENDPGLCYSTQATFPQRLHIAGD
GSLVCPYVSYFKDENNELPEVQWYKNCKPLLLDNVSFFGVKDKLLVRNVAEEHRGDYICRMSYTFRGKQY
PVTRVIQFITIDENKRDRPVILSPRNETIEADPGSMIQLICNVTGQFSDLVYWKWNGSEIEWNDPFLAED
YQFVEHPSTKRKYTLITTLNISEVKSQFYRYPFICVVKNTNIFESAHVQLIYPVPDFKNYLIGGFIILTA
TIVCCVCIYKVFKVDIVLWYRDSCSGFLPSKASDGKTYDAYILYPKTLGEGSFSDLDTFVFKLLPEVLEG
QFGYKLFIYGRDDYVGEDTIEVTNENVKKSRRLIIILVRDMGGFSWLGQSSEEQIAIYNALIQEGIKIVL
LELEKIQDYEKMPDSIQFIKQKHGVICWSGDFQERPQSAKTRFWKNLRYQMPAQRRSPLSKHRLLTLDPV
RDTKEKLPAATHLPLG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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