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Report for CCDS35570.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35570.1 Public Mus musculus 1 Hspe1 23 108 98 CCDS HistoryNCBI Gene:15528Re-query CCDS DB by CCDS ID:35570.1Re-query CCDS DB by GeneID:15528See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35570.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000075242.6 ENSMUSP00000074724.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000075242.6Link to Ensembl Protein Viewer:ENSMUSP00000074724.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000075242Re-query CCDS DB by Protein ID:ENSMUSP00000074724
Original member Current member NCBI NM_008303.4 NP_032329.1 Accepted alive Link to Nucleotide Sequence:NM_008303.4Link to Protein Sequence:NP_032329.1Re-query CCDS DB by Nucleotide ID:NM_008303Re-query CCDS DB by Protein ID:NP_032329Link to BLAST:NP_032329.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032329.1 102 Q64433 102 100% 0 0

Chromosomal Locations for CCDS 35570.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 55088410 55088412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 55089051 55089215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 55090713 55090802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 55091070 55091120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (309 nt):
ATGGCTGGACAAGCTTTTAGGAAGTTTCTTCCGCTCTTTGACAGAGTATTGGTTGAAAGGAGTGCTGCCG
AAACTGTAACCAAAGGTGGCATTATGCTTCCAGAAAAGTCTCAAGGAAAAGTGTTGCAAGCAACGGTCGT
GGCTGTGGGGTCAGGAGGGAAAGGAAAGAGTGGAGAGATTGAGCCTGTCAGTGTGAAAGTTGGAGATAAA
GTTCTTCTCCCAGAATATGGAGGCACCAAAGTAGTTCTAGATGACAAGGATTATTTCTTATTTAGAGATA
GTGACATTCTTGGAAAGTATGTCGACTGA

Translation (102 aa):
MAGQAFRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVGSGGKGKSGEIEPVSVKVGDK
VLLPEYGGTKVVLDDKDYFLFRDSDILGKYVD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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