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Report for CCDS35582.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35582.1 Public Mus musculus 1 Cflar 23 108 98 CCDS HistoryNCBI Gene:12633Re-query CCDS DB by CCDS ID:35582.1Re-query CCDS DB by GeneID:12633See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35582.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114309.7 ENSMUSP00000109948.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114309.7Link to Ensembl Protein Viewer:ENSMUSP00000109948.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114309Re-query CCDS DB by Protein ID:ENSMUSP00000109948
Original member Current member NCBI NM_009805.4 NP_033935.2 Accepted alive Link to Nucleotide Sequence:NM_009805.4Link to Protein Sequence:NP_033935.2Re-query CCDS DB by Nucleotide ID:NM_009805Re-query CCDS DB by Protein ID:NP_033935Link to BLAST:NP_033935.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033935.2 215 O35732-2 215 100% 0 0

Chromosomal Locations for CCDS 35582.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 58726437 58726732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58729056 58729161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58731152 58731287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58732253 58732362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (648 nt):
ATGGCCCAGAGCCCTGTGTCTGCCGAGGTCATTCACCAGGTGGAAGAGTGTCTTGATGAAGACGAGAAGG
AG
ATGATGCTCTTCCTGTGTAGAGATGTGACTGAGAACCTGGCTGCACCTAACGTCAGGGACCTCCTGGA
T
AGCTTAAGTGAGAGAGGCCAGCTCTCTTTTGCTACCTTGGCTGAATTGCTCTACAGAGTGAGGCGGTTT
GAC
CTTCTCAAGAGGATCTTGAAGACAGACAAAGCAACCGTGGAGGACCACCTGCGCAGAAACCCTCACC
TG
GTTTCTGATTATAGGGTCCTGCTGATGGAGATTGGTGAGAGCTTAGATCAGAACGATGTATCCTCCTT
A
GTTTTCCTTACAAGGGATTACACAGGCAGAGGCAAGATAGCCAAGGACAAGAGTTTCTTGGATCTGGTG
ATT
GAATTGGAGAAACTGAATCTAATTGCTTCAGACCAATTGAATTTGTTAGAAAAATGCCTGAAGAACA
TC
CACAGAATAGACTTGAACACAAAGATCCAGAAGTACACCCAGTCCAGCCAAGGAGCAAGATCAAATAT
G
AATACTCTCCAGGCTTCGCTCCCAAAATTGAGTATCAAGTATAACTCAAGGGTGAGTCTGGAGCCAGTG
TAT
GGAGTACCAGCATGA


Translation (215 aa):
MAQSPVSAEVIHQVEECLDEDEKEMMLFLCRDVTENLAAPNVRDLLDSLSERGQLSFATLAELLYRVRRF
D
LLKRILKTDKATVEDHLRRNPHLVSDY
RVLLMEIGESLDQNDVSSLVFLTRDYTGRGKIAKDKSFLDLV
I
ELEKLNLIASDQLNLLEKCLKNIHRIDLNTKIQKYTQS
SQGARSNMNTLQASLPKLSIKYNSRVSLEPV
Y
GVPA




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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