CCDS Report for Consensus CDS

PubMed

Entrez

Gene

BLAST

OMIM

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Genome Displays

	Ensembl
	NCBI
	UCSC
	VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS35589.1 (current version)

CCDS	Status	Species	Chrom.	Gene	CCDS Release	NCBI Annotation Release	Ensembl Annotation Release	Links
35589.1	Public	Mus musculus	1	Nrp2	23	108	98

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35589.1

Original	Current	Source	Nucleotide ID	Protein ID	Status in CCDS	Seq. Status	Links
		EBI	ENSMUST00000114157.2	ENSMUSP00000109794.2	Accepted	alive
		NCBI	NM_001077403.1	NP_001070871.1	Accepted	alive

RefSeq	Length	Related UniProtKB/SwissProt	Length	Identity	Gaps	Mismatches
NP_001070871.1	931	O35375-1	931	100%	0	0

Chromosomal Locations for CCDS 35589.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)

Genome Browser links:

Chromosome	Start	Stop
1	62704205	62704277
1	62718930	62719107
1	62738289	62738470
1	62744175	62744405
1	62745358	62745513
1	62747158	62747327
1	62749133	62749288
1	62760775	62760919
1	62762691	62763040
1	62764850	62764994
1	62769000	62769116
1	62771705	62771845
1	62783294	62783556
1	62785045	62785141
1	62786281	62786316
1	62812534	62812584
1	62815333	62815637

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.

Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2796 nt):
ATGGATATGTTTCCTCTTACCTGGGTTTTCTTAGCTCTGTACTTTTCAGGACACGAAGTGAGAAGCCAGC AAGATCCACCCTGCGGAGGTCGGCTGAATTCCAAAGATGCTGGCTACATCACTTCCCCAGGCTACCCCCA GGACTATCCCTCCCACCAGAACTGTGAGTGGATTGTCTACGCCCCCGAACCCAACCAGAAGATTGTTCTC AACTTCAACCCTCACTTTGAAATCGAGAAACACGACTGCAAGTATGACTTCATTGAGATTCGGGATGGGG ACAGTGAGTCAGCTGACCTCCTGGGCAAGCACTGTGGGAACATCGCCCCGCCCACCATCATCTCCTCAGG CTCCGTGTTATACATCAAGTTCACCTCAGACTACGCCCGGCAGGGGGCAGGTTTCTCTCTACGCTATGAG ATCTTCAAAACAGGCTCTGAAGATTGTTCCAAGAACTTTACAAGCCCCAATGGGACCATTGAATCTCCAG GGTTTCCAGAGAAGTATCCACACAATCTGGACTGTACCTTCACCATCCTGGCCAAACCCAGGATGGAGAT CATCCTACAGTTCCTGACCTTTGACCTGGAGCATGACCCTCTACAAGTGGGGGAAGGAGACTGTAAATAT GACTGGCTGGACATCTGGGATGGCATTCCACATGTTGGACCTCTGATTGGCAAGTACTGTGGGACGAAAA CACCCTCCAAACTCCGCTCGTCCACGGGGATCCTCTCCTTGACCTTTCACACGGACATGGCAGTGGCCAA GGATGGCTTCTCCGCACGTTACTATTTGATCCACCAGGAGCCACCTGAGAATTTTCAGTGCAATGTCCCT TTGGGAATGGAGTCTGGCCGGATTGCTAATGAACAGATCAGTGCCTCCTCCACCTTCTCTGATGGGAGGT GGACTCCTCAACAGAGCCGGCTCCATGGTGATGACAATGGCTGGACACCCAATTTGGATTCCAACAAGGA GTATCTCCAGGTGGACCTGCGCTTCCTAACCATGCTCACAGCCATTGCAACACAGGGAGCCATTTCCAGG GAAACCCAGAAAGGCTACTACGTCAAATCGTACAAGCTGGAAGTCAGCACAAATGGTGAAGATTGGATGG TCTACCGGCATGGCAAAAACCACAAGATATTCCAAGCGAACAATGATGCGACCGAGGTGGTGCTAAACAA GCTCCACATGCCACTGCTGACTCGGTTCATCAGGATCCGCCCGCAGACGTGGCATTTGGGCATTGCCCTT CGCCTGGAGCTCTTTGGCTGCCGGGTCACAGATGCACCCTGCTCCAACATGCTGGGGATGCTCTCGGGCC TCATTGCTGATACCCAGATCTCTGCCTCCTCCACCCGAGAGTACCTCTGGAGCCCCAGTGCTGCCCGCCT GGTTAGTAGCCGCTCTGGCTGGTTTCCTCGGAACCCTCAAGCCCAGCCAGGTGAAGAATGGCTTCAGGTA GACCTGGGGACACCCAAGACAGTGAAAGGGGTCATCATCCAGGGAGCCCGAGGAGGAGACAGCATCACTG CCGTGGAAGCCAGGGCGTTTGTACGCAAGTTCAAAGTCTCCTACAGCCTAAATGGCAAGGACTGGGAATA TATCCAGGACCCCAGGACTCAGCAGACAAAGCTGTTTGAAGGGAACATGCACTATGACACCCCTGACATC CGAAGGTTCGATCCTGTTCCAGCGCAGTATGTGCGGGTGTACCCAGAGAGGTGGTCGCCAGCAGGCATCG GGATGAGGCTGGAGGTGCTGGGCTGTGACTGGACAGACTCAAAGCCCACAGTGGAGACGCTGGGACCCAC CGTGAAGAGTGAAGAGACTACCACCCCATATCCCATGGATGAGGATGCCACCGAGTGTGGGGAAAACTGC AGCTTTGAGGATGACAAAGATTTGCAACTTCCTTCAGGATTCAACTGCAACTTTGATTTTCCGGAAGAGA CCTGTGGTTGGGTGTACGACCATGCCAAGTGGCTCCGGAGCACGTGGATCAGCAGCGCTAACCCCAATGA CAGAACATTTCCAGATGACAAGAACTTCTTGAAACTGCAGAGTGATGGCCGACGAGAGGGCCAGTACGGG CGGCTCATCAGCCCACCGGTGCACCTGCCCCGAAGCCCTGTGTGCATGGAGTTCCAGTACCAAGCCATGG GCGGCCACGGGGTGGCACTGCAGGTGGTTCGGGAAGCCAGCCAGGAAAGCAAACTCCTTTGGGTCATCCG TGAGGACCAGGGCAGCGAGTGGAAGCACGGGCGCATTATCCTGCCCAGCTATGACATGGAGTATCAGATC GTGTTCGAGGGAGTGATAGGGAAGGGACGATCGGGAGAGATTTCCATCGATGACATTCGGATAAGCACTG ATGTCCCACTGGAGAACTGCATGGAACCCATATCAGCTTTTGCAGGTGAGGATTTTAAAGTGGACATCCC AGAAACCCATGGGGGAGAGGGCTATGAAGATGAGATTGATGATGAATATGAAGGAGATTGGAGCAACTCT TCTTCCTCTACCTCAGGGGCTGGTGACCCCTCATCTGGCAAAGAAAAGAGCTGGCTGTACACCCTAGATC CCATTCTGATCACCATCATCGCCATGAGCTCGCTGGGGGTCCTGCTGGGGGCCACCTGTGCGGGCCTCCT CCTTTACTGCACCTGCTCCTATTCGGGTCTGAGTTCGAGGAGCTGCACCACACTGGAGAACTACAACTTT GAGCTCTACGATGGCCTCAAGCACAAGGTCAAGATCAATCATCAGAAGTGCTGCTCGGAGGCATGA
Translation (931 aa):
MDMFPLTWVFLALYFSGHEVRSQQDPPCGGRLNSKDAGYITSPGYPQDYPSHQNCEWIVYAPEPNQKIVL NFNPHFEIEKHDCKYDFIEIRDGDSESADLLGKHCGNIAPPTIISSGSVLYIKFTSDYARQGAGFSLRYE IFKTGSEDCSKNFTSPNGTIESPGFPEKYPHNLDCTFTILAKPRMEIILQFLTFDLEHDPLQVGEGDCKY DWLDIWDGIPHVGPLIGKYCGTKTPSKLRSSTGILSLTFHTDMAVAKDGFSARYYLIHQEPPENFQCNVP LGMESGRIANEQISASSTFSDGRWTPQQSRLHGDDNGWTPNLDSNKEYLQVDLRFLTMLTAIATQGAISR ETQKGYYVKSYKLEVSTNGEDWMVYRHGKNHKIFQANNDATEVVLNKLHMPLLTRFIRIRPQTWHLGIAL RLELFGCRVTDAPCSNMLGMLSGLIADTQISASSTREYLWSPSAARLVSSRSGWFPRNPQAQPGEEWLQV DLGTPKTVKGVIIQGARGGDSITAVEARAFVRKFKVSYSLNGKDWEYIQDPRTQQTKLFEGNMHYDTPDI RRFDPVPAQYVRVYPERWSPAGIGMRLEVLGCDWTDSKPTVETLGPTVKSEETTTPYPMDEDATECGENC SFEDDKDLQLPSGFNCNFDFPEETCGWVYDHAKWLRSTWISSANPNDRTFPDDKNFLKLQSDGRREGQYG RLISPPVHLPRSPVCMEFQYQAMGGHGVALQVVREASQESKLLWVIREDQGSEWKHGRIILPSYDMEYQI VFEGVIGKGRSGEISIDDIRISTDVPLENCMEPISAFAGEDFKVDIPETHGGEGYEDEIDDEYEGDWSNS SSSTSGAGDPSSGKEKSWLYTLDPILITIIAMSSLGVLLGATCAGLLLYCTCSYSGLSSRSCTTLENYNF ELYDGLKHKVKINHQKCCSEA

	Links Key
	Links to:	History report BLAST report Entrez Gene Nucleotide report Protein report
	Re-query CCDS DB by:	CCDS ID Gene ID Nucleotide ID Protein ID
	Genome Browser Links:	Ensembl Genome Browser NCBI Sequence Viewer UCSC Genome Browser VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH