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Report for CCDS35621.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35621.1 Public Mus musculus 1 Retreg2 23 108 98 CCDS HistoryNCBI Gene:227298Re-query CCDS DB by CCDS ID:35621.1Re-query CCDS DB by GeneID:227298See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35621.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000097694.10 ENSMUSP00000095300.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000097694.10Link to Ensembl Protein Viewer:ENSMUSP00000095300.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000097694Re-query CCDS DB by Protein ID:ENSMUSP00000095300
Original member NCBI NM_170755.2 NP_739561.2 Updated not alive Link to Nucleotide Sequence:NM_170755.2Link to Protein Sequence:NP_739561.2Re-query CCDS DB by Nucleotide ID:NM_170755Re-query CCDS DB by Protein ID:NP_739561
Current member NCBI NM_170755.3 NP_739561.2 Accepted alive Link to Nucleotide Sequence:NM_170755.3Link to Protein Sequence:NP_739561.2Re-query CCDS DB by Nucleotide ID:NM_170755Re-query CCDS DB by Protein ID:NP_739561Link to BLAST:NP_739561.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_739561.2 541 Q6NS82-1 541 100% 0 0

Chromosomal Locations for CCDS 35621.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 75142863 75143128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75143369 75143475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75143923 75143953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75144304 75144439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75144622 75144706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75144960 75145103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75145259 75145353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75145680 75145815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75146430 75147055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1626 nt):
ATGGCGAGCAGCGGTGGCGGTAACACCGGCGCGGGTGGCACCTCGGGGCTGGGCCTGGGCCTGGGGCTGA
GCCTCGGCATGGGTGAGGCCACTGGCGACGCGGAGGAGGAGGCGGCCGCAGCCGAGGCAGTGGGACGTTT
AGCTACGTCCCTGTGGCTGCGGCTCCGCGGCTGGGAGGCGGTGCTGGCGGCCGCACAGCGACTGCTGGTT
TGGGAGAAGCCGCTGCACAGCCTGGTCACGGCGGCCACACTCAACGGCCTCTTCTGGTTGTTGTCTTCGT
CGTCCCTCCGGCCCTTCTTCCTGCTCAGCATCTCACTTTTGACCTATTTTCTACTGGATCTCTGGCATCC
TCGCTTTCTCCCTGACGTTTCAGCACCACCCCCTGAAGAACCACACTCTGACAGTGAGGGTGCGGGGTCA
GGCGCCCAGCCGCACCTGCTGAGTGTGCCCGAGTTGTGCAGATACCTGGCTGAGAGCTGGCTCACCTTCC
AGATTCACCTGCAAGAGCTGTTGCAGTACAAGAGGCAGAATCCAGCTCAGTTCTGCGCTCGGGGCTGCGC
TGCCTGTGCTGTGCTGGCTGTGTTGGGACACTATGTTCCGGGAGTTATGATTTCCTACATTGTCTTGCTG
AGTATCCTGCTGTGGCCCCTGGTGGTCTATCACGAGTTGATCCAGAGGATGTATACTCGCCTGGAGCCCT
TGCTCATGCAGCTGGACTACAGCATGAAAGCTGAAGCTGATGCCCTGCACCACAAACATGACAAGAGAAA
GCGCCAAGGGAAGAGTGCACCCCCAGCAGGAGATGAGCCACTGGCGGAAACAGAGAGTGAAAGCGAGGCA
GAGTTGGCTGGCTTCTCTCCAGTGGTGGATGTGAAGAAAACAGCCCTGGCCTTGGCTATTACAGACTCTG
AGCTGTCAGATGAGGAGGCCTCTATCTTAGAGAGCGGCGGTTTCTCTGTATCTCGGGCCACCACTCCACA
ACTGACAGATGTTTCTGAAGATTTGGACCAGCAGAGCCTGCCAAGTGAGCCAGAAGAGGCTCTGAACCGA
GAGCTGGGGGAGGGGGAAGAGACAGAGCTGGCCTCTCCTGAAGACCTGCTAAGTGCGCCTCCAGCCCTCT
CAAAGCAAGCTTTGGACACCGAAGAGGAGGGGGCTGCAGACAAGGAAGCCTTGCTTCAGCTCTCATCCCC
TCTTCACTTTGTGAATACGCACTTCAATGGGGCAGGGTCCCCCCAAGATGGAGTGAAATGCCCTCCTGGT
GCACCAGTGAAGACCCTGAGCCCAGAGGCAGTGAGTGGTGACCTAATGGCTCCATCCAGCACCCTCTCAC
CCCAACTTTGCCTTGCTGAAAGTGGTCCAGTTACCCCCCTCTCTCCCTCTGTGCTCCCATCCCTTCCCCA
GGACTCACCTCAACCCCTGGCTGCTCCTGAGGAGGAAGAGGCACTCACAACTGAGGACTTTGAGTTGCTG
GATCAGGGGGAGCTGGAGCAACTGAATGCAGAGCTGGGCTTGGGACCAGAGATGCCTCCAAAGCCCCCTG
ATGTTCTGCCTCCTCCTCCCCTGGGGGCAGACAGCCATTCCCTGGTACAGTCAGACCAAGAGGCTCATGC
AGAGGTTGAGCCATGA

Translation (541 aa):
MASSGGGNTGAGGTSGLGLGLGLSLGMGEATGDAEEEAAAAEAVGRLATSLWLRLRGWEAVLAAAQRLLV
WEKPLHSLVTAATLNGLFWLLSSSSLRPFFLLSISLLTYFLLDLWHPRFLPDVSAPPPEEPHSDSEGAGS
GAQPHLLSVPELCRYLAESWLTFQIHLQELLQYKRQNPAQFCARGCAACAVLAVLGHYVPGVMISYIVLL
SILLWPLVVYHELIQRMYTRLEPLLMQLDYSMKAEADALHHKHDKRKRQGKSAPPAGDEPLAETESESEA
ELAGFSPVVDVKKTALALAITDSELSDEEASILESGGFSVSRATTPQLTDVSEDLDQQSLPSEPEEALNR
ELGEGEETELASPEDLLSAPPALSKQALDTEEEGAADKEALLQLSSPLHFVNTHFNGAGSPQDGVKCPPG
APVKTLSPEAVSGDLMAPSSTLSPQLCLAESGPVTPLSPSVLPSLPQDSPQPLAAPEEEEALTTEDFELL
DQGELEQLNAELGLGPEMPPKPPDVLPPPPLGADSHSLVQSDQEAHAEVEP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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