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Report for CCDS35760.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35760.1 Public Mus musculus 1 Pou2f1 23 108 98 CCDS HistoryNCBI Gene:18986Re-query CCDS DB by CCDS ID:35760.1Re-query CCDS DB by GeneID:18986See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35760.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000160260.8 ENSMUSP00000124738.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000160260.8Link to Ensembl Protein Viewer:ENSMUSP00000124738.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000160260Re-query CCDS DB by Protein ID:ENSMUSP00000124738
Original member Current member NCBI NM_011137.3 NP_035267.2 Accepted alive Link to Nucleotide Sequence:NM_011137.3Link to Protein Sequence:NP_035267.2Re-query CCDS DB by Nucleotide ID:NM_011137Re-query CCDS DB by Protein ID:NP_035267Link to BLAST:NP_035267.2

Chromosomal Locations for CCDS 35760.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 165875738 165876048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 165876977 165877065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 165880130 165880475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 165883047 165883118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 165891810 165891915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 165894905 165895084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 165896437 165896582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 165897625 165897766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 165902140 165902313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 165906685 165906779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 165908880 165909006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 165911288 165911476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 165913227 165913349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 165915110 165915163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 165916922 165917022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 165931662 165931727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 166002562 166002622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2382 nt):
ATGGCGGACGGAGGAGCAGCGAGTCAAGATGAGAGTTCAGCCGCGGCGGCAGCAGCAGCAGACTCAAGAA
TGAATAATCCATCAGAAACCAATAAATCATCTATGGAGAGTGAAGATGCCAGCACAGGCACACAAACCAA
TGGTCTGGACTTTCAGAAACAGCCCGTGCCCGTTGGAGGAGCGATCTCCACAGCCCAGGCCCAGGCCTTC
CTCGGACATCTTCACCAGGTCCAGCTAGCTGGGACAAGTTTACAGGCTGCTGCTCAGTCTTTAAATGTAC
AGTCTAAATCCAGTGAAGAGTCGGGAGATTCGCAGCAGTCGAGCCAGCCTTCTTCCCAGCCGCCTTCAGT
GCAGTCAGCCATTCCCCAGACCCAGCTAATGCTGGCTGGGGGACAGATAACTGGGCTCACGTTGACCCCA
GCCCAGCAACAGTTACTGCTACAGCAGGCGCAGGCCCAGGCCCAGCTCCTGGCCGCTGCAGTGCAGCAAC
ACTCCGCCAGCCAACAGCACAGTGCTGCTGGGGCCACCATCTCAGCCTCCGCCGCCACACCCATGACGCA
GATCCCCCTGTCTCAGCCCATACAGATTGCACAGGATCTTCAACAATTGCAACAGCTTCAGCAGCAAAAT
CTCAACTTGCAACAGTTTGTGTTGGTGCACCCAACCACCAACCTGCAACCAGCACAGTTTATCATCTCAC
AGACCCCCCAGGGCCAGCAGGGTCTCCTGCAAGCGCAAAATCTTTTAACGCAACTACCTCAGCAAAGCCA
AGCCAACCTCCTACAGCCACAGCCAAGCATCACCCTCACGTCCCAGCCTACCACCCCAACTCGCACAATA
GCAGCAGCCTCAGTTCAGACACTTCCACAGAGCCAGTCAACACCAAAGCGAATTGACACTCCCAGCTTGG
AGGAGCCCAGTGACCTTGAGGAGCTTGAGCAGTTTGCCAAGACTTTCAAACAAAGACGAATCAAACTTGG
ATTCACTCAGGGTGATGTTGGGCTCGCTATGGGGAAATTATATGGAAATGACTTCAGCCAAACCACCATC
TCTCGCTTTGAAGCCTTGAACCTCAGCTTTAAGAACATGTGCAAGTTAAAGCCCCTTTTAGAGAAGTGGC
TAAATGATGCAGAGAACCTCTCATCTGATTCTACAGCATCTAGCCCAAGTGCTTTGAATTCTCCAGGATT
GGGGGCTGAGGGCTTGAATCGTAGGAGGAAAAAACGCACCAGCATAGAGACCAACATCCGTGTGGCCTTA
GAGAAGAGTTTCATGGAGAATCAAAAGCCTACCTCGGAAGACATCACCTTGATTGCTGAACAGCTCAATA
TGGAAAAGGAGGTGATTCGTGTTTGGTTTTGTAACCGCCGCCAGAAGGAGAAAAGAATCAACCCGCCCAG
CAGTGGTGGGACCAGCAGCTCACCTATCAAAGCAATTTTCCCCAGCCCAGCCTCATTGGTGGCAACCACT
CCAAGCCTTGTGACAAGCAGTACGGCAACTACCCTCACAGTCAACCCTGTCCTCCCTTTAACCAGTGCTG
CTGTGACTAATCTCTCTCTTACAGATCAAGATCTTAGAAGAGGATGCAGCTGGGAAGTGCTTAGGAGTCT
ACCAGACAGAGTCACCACCACAGCAGGCACTACAGACTCGACGTCCAACAACAACACGGCCACGGTGATT
TCCACAGCACCCCCTGCTTCCTCAGCAGTCACATCCCCTTCCTTGAGTCCCTCTCCCTCTGCCTCGGCCT
CCACCTCAGAGGCCTCCAGTGCCAGTGAGACCAACACGACACAGACCACCTCCACGCCTCTTCCCTCCCC
TCTCGGAGCCAGCCAGGTGATGGTGACCACGCCCGGCTTACAGACAGCAGCCGCCGCTCTCCAAGGAGCG
GCACAGTTGCCAGCAAACGCCAGTCTTGCTGCTATGGCTGCTGCTGCGGGACTCAGCCCAGGCCTCATGG
CACCCTCACAGTTTGCTGCTGGAGGTGCCTTACTCAGTCTCAGTCCGGGGACTCTGGGCAGTGCTCTCAG
CCCAGCCCTAATGAGCAACAGTACACTGGCAACGATTCAAGCTCTTGCTTCTAGTGGCTCTCTTCCAATA
ACGTCTCTGGATGCAACTGGGAACCTGGTATTTGCCAATGCAGGAGGAGCCCCGAACATCGTGACTGCAC
CTCTGTTCCTGAACCCTCAGAACCTCTCTCTGCTCACCAGCAACCCAGTAAGCTTGGTTTCTGCCGCTGC
AGCCTCCACAGGGAACTCTGCACCTACAGCCAGCCTTCATGCCTCCTCCACCTCAACTGAGTCCATCCAG
AGCTCTCTGTTCACAGTCGCCTCTGCCAGTGGGCCTGCTTCCACCACCACAGCTGCCTCCAAGGCACAGT
GA

Translation (793 aa):
MADGGAASQDESSAAAAAAADSRMNNPSETNKSSMESEDASTGTQTNGLDFQKQPVPVGGAISTAQAQAF
LGHLHQVQLAGTSLQAAAQSLNVQSKSSEESGDSQQSSQPSSQPPSVQSAIPQTQLMLAGGQITGLTLTP
AQQQLLLQQAQAQAQLLAAAVQQHSASQQHSAAGATISASAATPMTQIPLSQPIQIAQDLQQLQQLQQQN
LNLQQFVLVHPTTNLQPAQFIISQTPQGQQGLLQAQNLLTQLPQQSQANLLQPQPSITLTSQPTTPTRTI
AAASVQTLPQSQSTPKRIDTPSLEEPSDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTI
SRFEALNLSFKNMCKLKPLLEKWLNDAENLSSDSTASSPSALNSPGLGAEGLNRRRKKRTSIETNIRVAL
EKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFCNRRQKEKRINPPSSGGTSSSPIKAIFPSPASLVATT
PSLVTSSTATTLTVNPVLPLTSAAVTNLSLTDQDLRRGCSWEVLRSLPDRVTTTAGTTDSTSNNNTATVI
STAPPASSAVTSPSLSPSPSASASTSEASSASETNTTQTTSTPLPSPLGASQVMVTTPGLQTAAAALQGA
AQLPANASLAAMAAAAGLSPGLMAPSQFAAGGALLSLSPGTLGSALSPALMSNSTLATIQALASSGSLPI
TSLDATGNLVFANAGGAPNIVTAPLFLNPQNLSLLTSNPVSLVSAAAASTGNSAPTASLHASSTSTESIQ
SSLFTVASASGPASTTTAASKAQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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