NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS35822.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35822.1 Public Mus musculus 1 Prox1 23 108 98 CCDS HistoryNCBI Gene:19130Re-query CCDS DB by CCDS ID:35822.1Re-query CCDS DB by GeneID:19130See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35822.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000010319.13 ENSMUSP00000010319.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000010319.13Link to Ensembl Protein Viewer:ENSMUSP00000010319.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000010319Re-query CCDS DB by Protein ID:ENSMUSP00000010319
Original member Current member EBI ENSMUST00000177288.3 ENSMUSP00000135066.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000177288.3Link to Ensembl Protein Viewer:ENSMUSP00000135066.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000177288Re-query CCDS DB by Protein ID:ENSMUSP00000135066
Original member Current member EBI ENSMUST00000175916.7 ENSMUSP00000135703.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000175916.7Link to Ensembl Protein Viewer:ENSMUSP00000135703.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000175916Re-query CCDS DB by Protein ID:ENSMUSP00000135703
Original member NCBI NM_001360827.1 NP_001347756.1 Updated not alive Link to Nucleotide Sequence:NM_001360827.1Link to Protein Sequence:NP_001347756.1Re-query CCDS DB by Nucleotide ID:NM_001360827Re-query CCDS DB by Protein ID:NP_001347756
Current member NCBI NM_001360827.2 NP_001347756.1 Accepted alive Link to Nucleotide Sequence:NM_001360827.2Link to Protein Sequence:NP_001347756.1Re-query CCDS DB by Nucleotide ID:NM_001360827Re-query CCDS DB by Protein ID:NP_001347756Link to BLAST:NP_001347756.1
Original member NCBI NM_008937.3 NP_032963.1 Updated not alive Link to Nucleotide Sequence:NM_008937.3Link to Protein Sequence:NP_032963.1Re-query CCDS DB by Nucleotide ID:NM_008937Re-query CCDS DB by Protein ID:NP_032963
Current member NCBI NM_008937.4 NP_032963.1 Accepted alive Link to Nucleotide Sequence:NM_008937.4Link to Protein Sequence:NP_032963.1Re-query CCDS DB by Nucleotide ID:NM_008937Re-query CCDS DB by Protein ID:NP_032963Link to BLAST:NP_032963.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001347756.1 737 P48437 737 100% 0 0
NP_032963.1 737 P48437 737 100% 0 0

Chromosomal Locations for CCDS 35822.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 190123220 190123405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 190146952 190147146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 190153416 190153523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 190160522 190162246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2214 nt):
ATGCCTGACCATGACAGCACAGCCCTCTTAAGCCGGCAAACCAAGAGGAGAAGGGTTGACATTGGAGTGA
AAAGGACGGTAGGGACAGCATCTGCATTTTTTGCTAAGGCAAGGGCAACATTTTTCAGTGCCATGAATCC
CCAAGGTTCAGAGCAGGATGTTGAATATTCTGTGGTGCAACACGCAGATGGGGAAAAGTCGAACGTACTC
CGCAAGCTGCTGAAGAGGGCGAACTCGTATGAAGATGCCATGATGCCTTTTCCAGGAGCAACTATAATTT
CCCAGCTGTTGAAAAATAACATGAACAAAAACGGTGGCACCGAGCCCAGTTTCCAAGCCAGCGGACTCTC
TAGCACAGGCTCCGAAGTACATCAGGAGGATATATGTAGCAACTCTTCAAGAGACAGCCCCCCAGAGTGT
CTTTCCCCTTTTGGCAGGCCTACTATGAGCCAGTTTGATGTGGATCGCTTATGTGATGAGCACCTGAGAG
CAAAGCGCGCCCGGGTTGAGAATATCATTCGGGGTATGAGCCATTCCCCCAGTGTGGCATTAAGGGGCAA
TGAAAACGAAAGAGAGATGGCCCCGCAGTCTGTGAGTCCCCGAGAAAGTTACAGAGAAAACAAACGCAAG
CAGAAGCTGCCCCAGCAGCAGCAACAGAGTTTCCAGCAGCTGGTTTCAGCCCGAAAAGAACAGAAGCGAG
AGGAGCGCCGACAGCTGAAACAGCAGCTGGAAGACATGCAGAAGCAGCTGCGCCAGCTGCAGGAGAAGTT
CTACCAGGTCTATGACAGCACAGACTCCGAAAATGATGAAGATGGCGACCTGTCTGAAGACAGCATGCGC
TCGGAGATCCTGGATGCACGGGCCCAGGACTCGGTGGGGCGCTCAGACAATGAGATGTGTGAGCTGGACC
CAGGGCAGTTCATCGACAGGGCCCGAGCCCTAATCAGGGAGCAGGAGATGGCTGAGAACAAGCCTAAGCG
AGAAGGCAGCAACAAAGAAAGAGACCACGGGCCAAACTCCTTGCAGCCAGAAGGCAAGCATCTGGCAGAG
ACCTTAAAACAGGAGCTGAACACGGCCATGTCGCAGGTTGTGGACACGGTGGTCAAAGTCTTCTCAGCCA
AACCCTCTCGCCAGGTTCCTCAGGTCTTCCCACCTCTCCAGATCCCCCAGGCCAGATTCGCAGTCAACGG
GGAAAACCACAATTTCCACACGGCCAACCAGCGCCTGCAATGCTTTGGTGATGTCATCATTCCGAACCCC
TTGGACACCTTTGGCAGTGTGCAGATGCCTAGTTCCACAGACCAGACGGAAGCCCTTCCCCTGGTGGTCC
GAAAAAACTCATCCGAGCAATCTGCCTCTGGCCCGGCCACTGGCGGCCACCACCAGCCCCTGCACCAGTC
ACCCCTCTCCGCCACTGCAGGCTTCACCACCCCTAGCTTCCGCCATCCCTTTCCCCTGCCCTTGATGGCT
TATCCATTTCAGAGTCCACTAGGTGCTCCCTCCGGCTCCTTCTCGGGGAAGGACAGAGCCTCTCCTGAGT
CCTTAGACTTGACTCGGGACACAACAAGTCTGAGGACCAAGATGTCATCACACCATCTGAGCCACCACCC
CTGTTCACCAGCACACCCACCCAGCACCGCAGAAGGACTCTCTTTGTCACTCATAAAGTCTGAGTGTGGA
GATCTTCAAGATATGTCCGACATCTCACCTTATTCAGGAAGCGCAATGCAGGAAGGGCTATCACCCAATC
ACTTGAAAAAGGCAAAACTCATGTTCTTTTACACCCGCTACCCCAGCTCCAACATGCTGAAGACCTACTT
CTCGGACGTGAAGTTCAACAGATGCATTACCTCGCAGCTCATCAAGTGGTTCAGCAATTTCCGTGAGTTT
TACTATATCCAGATGGAGAAGTATGCGCGTCAAGCCATCAATGATGGAGTCACCAGTACAGAAGAGCTCT
CCATCACCAGGGATTGTGAGCTATACCGAGCCCTCAACATGCACTACAACAAAGCAAATGACTTTGAGGT
TCCAGAGAGATTCCTGGAAGTTGCGCAGATCACGTTACGGGAGTTTTTCAATGCCATCATCGCGGGCAAA
GATGTTGATCCTTCCTGGAAGAAGGCCATTTACAAGGTCATCTGCAAGCTGGATAGTGAAGTTCCTGAGA
TTTTCAAATCCCCTAACTGCCTACAAGAACTCCTTCACGAGTAG

Translation (737 aa):
MPDHDSTALLSRQTKRRRVDIGVKRTVGTASAFFAKARATFFSAMNPQGSEQDVEYSVVQHADGEKSNVL
RKLLKRANSYEDAMMPFPGATIISQLLKNNMNKNGGTEPSFQASGLSSTGSEVHQEDICSNSSRDSPPEC
LSPFGRPTMSQFDVDRLCDEHLRAKRARVENIIRGMSHSPSVALRGNENEREMAPQSVSPRESYRENKRK
QKLPQQQQQSFQQLVSARKEQKREERRQLKQQLEDMQKQLRQLQEKFYQVYDSTDSENDEDGDLSEDSMR
SEILDARAQDSVGRSDNEMCELDPGQFIDRARALIREQEMAENKPKREGSNKERDHGPNSLQPEGKHLAE
TLKQELNTAMSQVVDTVVKVFSAKPSRQVPQVFPPLQIPQARFAVNGENHNFHTANQRLQCFGDVIIPNP
LDTFGSVQMPSSTDQTEALPLVVRKNSSEQSASGPATGGHHQPLHQSPLSATAGFTTPSFRHPFPLPLMA
YPFQSPLGAPSGSFSGKDRASPESLDLTRDTTSLRTKMSSHHLSHHPCSPAHPPSTAEGLSLSLIKSECG
DLQDMSDISPYSGSAMQEGLSPNHLKKAKLMFFYTRYPSSNMLKTYFSDVKFNRCITSQLIKWFSNFREF
YYIQMEKYARQAINDGVTSTEELSITRDCELYRALNMHYNKANDFEVPERFLEVAQITLREFFNAIIAGK
DVDPSWKKAIYKVICKLDSEVPEIFKSPNCLQELLHE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH