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Report for CCDS35823.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35823.1 Public Mus musculus 1 Flvcr1 23 108 98 CCDS HistoryNCBI Gene:226844Re-query CCDS DB by CCDS ID:35823.1Re-query CCDS DB by GeneID:226844See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35823.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000085635.5 ENSMUSP00000082777.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000085635.5Link to Ensembl Protein Viewer:ENSMUSP00000082777.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000085635Re-query CCDS DB by Protein ID:ENSMUSP00000082777
Original member Current member NCBI NM_001081259.1 NP_001074728.1 Accepted alive Link to Nucleotide Sequence:NM_001081259.1Link to Protein Sequence:NP_001074728.1Re-query CCDS DB by Nucleotide ID:NM_001081259Re-query CCDS DB by Protein ID:NP_001074728Link to BLAST:NP_001074728.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074728.1 560 B2RXV4-1 560 100% 0 0

Chromosomal Locations for CCDS 35823.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 191008139 191008210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 191008368 191008435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 191009549 191009663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 191011188 191011293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 191011536 191011646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 191012139 191012242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 191013364 191013431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 191015358 191015498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 191021076 191021256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 191025377 191026093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1683 nt):
ATGGCGCGGCCCGATGACGAGGTGGGGCCGGCCGTGGCGCCCGGGCACCCGCTGGGGAAGGGATACCTTC
CAGTGCCCAAGGGCGCCCCGGACGGGGAGGCGCGCTTGGTACCGCAAAACGGGCCTGAGGCGCTGAACGG
AGGCCCCGGGCTCGGCCCGCTGATCGCGGGAGCCCAGGGCGGGCCGCAAGCCCTGATAGCGGCGGAGGAG
GAGACCCAGGCCCGGCTGTTGCCCGCGGGCGACGGGGAGGACGTCCCATGCCCCGCGTGTCCCCCGCGCA
CAGCGCTGTCGCCGAGGCGCTTCGTGGTGCTGCTCATCTTCAGCCTTTACTCGCTGGTGAACGCCTTCCA
GTGGATCCAGTACAGCAGCATCAGCAACGTGTTCGAGGACTTCTACGAGGTGTCGCCGCTGCACATCAAC
TGGCTGTCCATGGTGTACATGGTGGCCTACGTGCCCCTCATCTTCCCGGCCACCTGGCTGCTGGACACGC
GAGGCCTGCGGCTCACGGCGCTGCTGGGCTCCGGCCTCAACTGCCTGGGAGCCTGGGTCAAGTGCGGCAG
CGTGCAGCGGCACCTCTTCTGGGTCACCATGCTGGGGCAGATCCTGTGCTCCGTGGCCCAGGTCTTCATC
CTGGGCTTGCCCTCCCCCGTCGCCTCGGTATGGTTTGGACCCAAGGAGGTGTCGACGGCTTGTGCCACAG
CAGTGCTGGGCAATCAGCTTGGAACTGCAGTTGGTTTTTTGTTGCCACCTGTTTTAGTGCCTGCCTTGGG
CACACAGAATAGCACAGGCCTCCTGGCTCACACACAGAATAACACAGACCTCCTGGCTCATAACATCAAC
ACCATGTTTTACGGAACAGCATTTATCTCCACATTTTTATTTTTTTTAACAATAATTGCATTCAAGGAGA
AACCTCCGTTGCCTCCAAGTCAGGCTCAGGCAGTTCTTCGAGACAGCCCCCCTGAAGAGTACTCCTACAA
GAGTTCTATCTGGAACCTGTGCAGAAACATCCCCTTTGTTCTCCTGCTGGTCAGTTATGGTATCATGACT
GGAGCATTTTATTCAATCTCAACATTATTGAATCAAATAATATTGACATATTATGTGGGAGAAGAGGTGA
ATGCTGGGAGGATCGGGCTGACACTGGTGGTAGCTGGAATGGTGGGCTCTATTCTCTGTGGCTTATGGCT
GGACTATACCAAAACCTACAAGCAGACAACTCTGATAGTGTACGTTCTGTCTTTCATTGGAATGCTCATA
TTCACATTCACACTGAACCTCGGGTACATCATCGTGGTGTTTTTTACTGGTGGGATTCTTGGCTTCTTCA
TGACTGGTTACCTCCCGCTGGGCTTTGAGTTTGCTGTGGAGATCACCTACCCTGAGTCTGAGGGCATGTC
CTCAGGGCTCCTCAACACTGCTGCACAGATACTTGGAATTTTCTTCACATTGGCTCAAGGAAAGATCACA
ACAGACTATAATAGTCCAGAGGCAGGAAACATTTTCCTTTGTGCCTGGATGTTTGTAGGCATAATTTTAA
CAGCGTTGATCAAGTCTGATCTGAGAAGGCACAATATAAACACCGGGCTTACAAACATTGACGTTAAAGC
TGTACCAGTTGATAGTCGGGTAGATCCAAAACCCAAAGTGATGGTGTCTATACAGTCGGAATCTTCACTC
TGA

Translation (560 aa):
MARPDDEVGPAVAPGHPLGKGYLPVPKGAPDGEARLVPQNGPEALNGGPGLGPLIAGAQGGPQALIAAEE
ETQARLLPAGDGEDVPCPACPPRTALSPRRFVVLLIFSLYSLVNAFQWIQYSSISNVFEDFYEVSPLHIN
WLSMVYMVAYVPLIFPATWLLDTRGLRLTALLGSGLNCLGAWVKCGSVQRHLFWVTMLGQILCSVAQVFI
LGLPSPVASVWFGPKEVSTACATAVLGNQLGTAVGFLLPPVLVPALGTQNSTGLLAHTQNNTDLLAHNIN
TMFYGTAFISTFLFFLTIIAFKEKPPLPPSQAQAVLRDSPPEEYSYKSSIWNLCRNIPFVLLLVSYGIMT
GAFYSISTLLNQIILTYYVGEEVNAGRIGLTLVVAGMVGSILCGLWLDYTKTYKQTTLIVYVLSFIGMLI
FTFTLNLGYIIVVFFTGGILGFFMTGYLPLGFEFAVEITYPESEGMSSGLLNTAAQILGIFFTLAQGKIT
TDYNSPEAGNIFLCAWMFVGIILTALIKSDLRRHNINTGLTNIDVKAVPVDSRVDPKPKVMVSIQSESSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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