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Report for CCDS35919.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35919.1 Public Mus musculus 10 Tacr2 23 108 98 CCDS HistoryNCBI Gene:21337Re-query CCDS DB by CCDS ID:35919.1Re-query CCDS DB by GeneID:21337See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35919.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020278.5 ENSMUSP00000020278.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020278.5Link to Ensembl Protein Viewer:ENSMUSP00000020278.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000020278Re-query CCDS DB by Protein ID:ENSMUSP00000020278
Original member Current member NCBI NM_009314.4 NP_033340.3 Accepted alive Link to Nucleotide Sequence:NM_009314.4Link to Protein Sequence:NP_033340.3Re-query CCDS DB by Nucleotide ID:NM_009314Re-query CCDS DB by Protein ID:NP_033340Link to BLAST:NP_033340.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033340.3 384 P30549 384 100% 0 0

Chromosomal Locations for CCDS 35919.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 62252818 62253209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 62258158 62258352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 62261172 62261325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 62261484 62261680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 62265051 62265267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1155 nt):
ATGGGGGCCCACGCCAGCGTTACCGACACCAACATCTTGTCTGGCCTTGAGAGTAACGCAACAGGCGTTA
CAGCCTTCTCTATGCCTGGCTGGCAGCTGGCGCTATGGGCCACAGCCTACCTGGCCCTGGTGCTGGTGGC
TGTAACAGGCAACGCCACAGTCATCTGGATCATTCTGGCCCATGAGAGAATGCGCACGGTCACCAACTAT
TTCATCATCAACCTGGCCTTGGCAGACCTCTGCATGGCGGCCTTCAATGCCACCTTCAACTTCATCTATG
CCAGTCACAACATCTGGTACTTCGGCAGCACCTTCTGCTACTTCCAGAACCTCTTTCCTGTCACAGCCAT
GTTCGTCAGCATCTACTCCATGACCGCCATCGCCGCTGACAGGTACATGGCCATTGTCCACCCTTTCCAG
CCACGGCTCTCCGCCCCCAGCACCAAGGCGGTTATTGCTGTCATCTGGCTGGTAGCCCTGGCTCTCGCCT
CCCCACAATGTTTCTACTCCACCATCACTGTGGACCAGGGGGCCACCAAGTGTGTGGTGGCCTGGCCCAA
TGACAACGGAGGCAAGATGCTCCTACTGTATCATCTGGTGGTGTTTGTCCTCATCTACTTCCTGCCTCTA
GTGGTGATGTTTGCAGCTTACAGTGTCATTGGCCTCACACTGTGGAAACGCGCCGTACCCAGACACCAGG
CTCATGGAGCTAACCTGCGCCATCTACAGGCCAAGAAGAAGTTTGTGAAGGCCATGGTACTGGTGGTGGT
GACATTTGCCATCTGCTGGCTGCCCTACCACCTCTACTTCATCCTGGGGACCTTCCAAGAGGACATCTAC
TACCGCAAGTTTATCCAGCAGGTCTACCTGGCACTCTTCTGGCTGGCCATGAGCTCCACCATGTACAACC
CCATCATTTATTGCTGCCTTAACCACAGGTTTCGCTCTGGATTCCGGCTTGCTTTCCGGTGCTGCCCCTG
GGGGACACCAACCGAGGAAGACAGGCTGGAGCTGACCCACACTCCGTCCATCTCCAGGAGAGTCAACCGG
TGTCACACCAAGGAGACTTTGTTCATGACAGGGGATATGACCCACTCTGAGGCTACCAATGGGCAGGTTG
GGGGCCCCCAGGATGGGGAGCCTGCTGGACCCTGA

Translation (384 aa):
MGAHASVTDTNILSGLESNATGVTAFSMPGWQLALWATAYLALVLVAVTGNATVIWIILAHERMRTVTNY
FIINLALADLCMAAFNATFNFIYASHNIWYFGSTFCYFQNLFPVTAMFVSIYSMTAIAADRYMAIVHPFQ
PRLSAPSTKAVIAVIWLVALALASPQCFYSTITVDQGATKCVVAWPNDNGGKMLLLYHLVVFVLIYFLPL
VVMFAAYSVIGLTLWKRAVPRHQAHGANLRHLQAKKKFVKAMVLVVVTFAICWLPYHLYFILGTFQEDIY
YRKFIQQVYLALFWLAMSSTMYNPIIYCCLNHRFRSGFRLAFRCCPWGTPTEEDRLELTHTPSISRRVNR
CHTKETLFMTGDMTHSEATNGQVGGPQDGEPAGP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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