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Report for CCDS36056.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36056.1 Public Mus musculus 10 Osbpl8 23 108 98 CCDS HistoryNCBI Gene:237542Re-query CCDS DB by CCDS ID:36056.1Re-query CCDS DB by GeneID:237542See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36056.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000105275.8 ENSMUSP00000100911.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105275.8Link to Ensembl Protein Viewer:ENSMUSP00000100911.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105275Re-query CCDS DB by Protein ID:ENSMUSP00000100911
Original member Current member NCBI NM_175489.3 NP_780698.2 Accepted alive Link to Nucleotide Sequence:NM_175489.3Link to Protein Sequence:NP_780698.2Re-query CCDS DB by Nucleotide ID:NM_175489Re-query CCDS DB by Protein ID:NP_780698Link to BLAST:NP_780698.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780698.2 889 B9EJ86 889 100% 0 0

Chromosomal Locations for CCDS 36056.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 111204799 111204840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 111224672 111224708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 111233553 111233690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 111255688 111255758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 111263180 111263257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 111265535 111265636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 111267605 111267808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 111269358 111269442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 111270491 111270662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 111272074 111272311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 111273026 111273210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 111274991 111275072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 111276460 111276558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 111277247 111277343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 111280290 111280388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 111282127 111282224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 111284330 111284419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 111286116 111286252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 111287827 111288012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 111288693 111288780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 111289789 111289894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 111291491 111291593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 111293092 111293224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2670 nt):
ATGGAGGCAGCCTTAGCAGACGGAGAACCTGACAGATCTTCGCTTCTTGGTGATAGCAAAGATGTCCTTG
GGCCATCAACTGTTGTAGCGAACAGTGACGAACCTCAGCATTTGACCCCAGGAAAGATGAGTCAGCGCCA
AGGCAGAGACGCTAACCCAACCCCAACTAGAGATCTGCCTCAGCCTTCTCTCAGCCCCGCCAGCCTTCAC
AGCCAGGGTTTTGAAAGAGGAAAAGAAGACATTTCTCAAAATAAAGATGACTCTTCACTTTCAATGTCAA
AGAGCAAGTCTGAATCTAAACTATATAATGGCTCAGAAAAGGACAGTTCAACTTCAAGTAAACTCACGAA
GAAAGAGTCTCTTAAGGTACAAAAGAAAAACTACCGTGAAGAGAAGAAGAGAGCCACGAAGGAGTTACTC
AGCACCATCACAGACCCCTCTGTCATTGTCATGGCCGACTGGCTGAAGATTCGTGGTACCCTGAAGAGCT
GGACCAAGCTGTGGTGTGTGTTGAAACCTGGCGTGCTTCTGATCTATAAAACACAAAAAAATGGTCAGTG
GGTCGGAACAGTCCTTCTGAATGCTTGTGAGATCATTGAACGTCCATCAAAAAAGGATGGCTTTTGTTTC
AAGCTTTTCCATCCTTTGGAGCAGTCTATTTGGGCAGTGAAGGGTCCTAAAGGTGAAGCGGTTGGCTCCA
TAACCCAGCCTCTACCTAGCAGCTACTTGATTATCCGAGCTACTTCAGAGTCAGATGGAAGGTGCTGGAT
GGATGCTTTGGAGTTGGCTTTGAAGTGTTCCAGTCTCCTTAAGCGGACCATGGTGAGGGAGGGGAAGGAG
CACGACCTGAGCATCTCCTCAGACAGCACACACGTGACGCTGTATGGCTTACTGCGCGCTAACAATCTCC
ACAGTGGCGACAACTTCCAGTTGAATGACAGTGAGATCGAAAGACAGCACTTTAAGGACCAAGATTTGTA
CTCTGATAAATCTGACAAGGAGAACGACCCGGAGCACGATGAGTCTGACAACGAGGTGCTGGGGAAGAGC
GAGGAGAGCGACACAGACACGTCCGAAAGGCAAGACGACTCGTACATCGACCCTGAGCCTGTGGAGCCCT
TAAAGGAGACCACCTACATGGAGCAGAGCCACGAAGAACTGGGAGAGGCAGGTGAGGCCTCTCAAACGGA
AACTGTGTCTGAAGAAAACAAAAGCCTTATCTGGACGCTGCTCAAGCAAGTCCGTCCCGGCATGGACCTA
TCCAGGGTGGTTCTTCCTACGTTTATTTTGGAGCCCCGCTCTTTCCTGGATAAGCTTTCAGATTACTACT
ACCACGCCGATTTCCTGTCTGAAGCTGCTCTAGAAGAAAATCCGTATTTCCGTTTGAAGAAAGTCGTGAA
ATGGTATTTGTCAGGATTTTATAAGAAGCCAAAGGGACTAAAGAAACCATATAATCCTATACTTGGTGAG
ACTTTCCGATGTTTATGGATTCATCCCAGAACAAACAGCAAAACTTTCTATATTGCTGAACAGGTGTCCC
ATCACCCACCAATATCTGCCTTTTATGTCAGTAACCGGAAAGATGGGTTTTGCCTTAGTGGTAGCATCCT
GGCTAAGTCCAAGTTTTATGGAAACTCGTTATCTGCCATATTGGAGGGAGAAGCCCGGTTAACTTTCTTG
AACAGAGGTGAAGATTACGTCATGACAATGCCATATGCTCACTGTAAAGGAATTCTTTATGGCACAATGA
CCCTGGAGCTTGGTGGAACTGTCAATATTACCTGTCAGAAGACTGGATACAGTGCGATACTTGAATTTAA
ACTAAAGCCATTTCTAGGGAGTAGTGATTATGTTAACCAAATATCAGGGAAACTTAAATTGGGAAAAGAA
GTCCTAGCTACTTTGGAAGGCCATTGGGATAGTGAAGTTTTCATTAATGACAAAAAGACTGATAACTCAG
AGATTTTCTGGAATCCAACTCCTGACATTAAACAGTGGAGATTAATAAGGCACACTGTAAAGTTTGAAGA
ACAGGATGATTTCGAATCAGAGAAACTCTGGCAACGAGTGACAAAAGCTATAAATGCCAAAGACCAAACG
GAAGCTACTCAAGAAAAGTATGTTCTGGAAGAAGCTCAAAGACAAGCTGCCAGAGATCGAAAAACAAAAA
CTCAAGAGTGGGTTTGTAAGTTATTTGAACTTGACCCACTCACTGGAGAATGGCACTATAAGTTTTCAGA
TACTCGACCATGGGACCCACTTAATGATATGATACAATTTGAAAAAGATGGAGTTATCCAGACCAAAGTG
AAACATCGCACTCCAATGGTTAGTGTTCCAAAAATGAAACATAAACCAACAAGGCAGCAGAAGAAAGTGG
TAAAAGGCTATTCTTCCCCAGAACCTGACATCCAGGATTCCTCTGGAAGTGAAGCTCAATCTGTAAAACC
AAGTACACGAAGGAAGAAGGGGATAGACCTGGGAGACATTCAGAGTTCCATTGAGTCTATAAAGCAGACA
CAGGAAGAGATTAAAAGAAATATTATGGCTCTTCGAAATCATTTACTTTCAAGTACACCTGCTACAGATT
ATTTTCTGCAACAGAAAGACTACTTCGTCATTTTCCTTCTGATTTTGCTTCAAGTCATAATAAACTTTAT
ATTTAAGTAG

Translation (889 aa):
MEAALADGEPDRSSLLGDSKDVLGPSTVVANSDEPQHLTPGKMSQRQGRDANPTPTRDLPQPSLSPASLH
SQGFERGKEDISQNKDDSSLSMSKSKSESKLYNGSEKDSSTSSKLTKKESLKVQKKNYREEKKRATKELL
STITDPSVIVMADWLKIRGTLKSWTKLWCVLKPGVLLIYKTQKNGQWVGTVLLNACEIIERPSKKDGFCF
KLFHPLEQSIWAVKGPKGEAVGSITQPLPSSYLIIRATSESDGRCWMDALELALKCSSLLKRTMVREGKE
HDLSISSDSTHVTLYGLLRANNLHSGDNFQLNDSEIERQHFKDQDLYSDKSDKENDPEHDESDNEVLGKS
EESDTDTSERQDDSYIDPEPVEPLKETTYMEQSHEELGEAGEASQTETVSEENKSLIWTLLKQVRPGMDL
SRVVLPTFILEPRSFLDKLSDYYYHADFLSEAALEENPYFRLKKVVKWYLSGFYKKPKGLKKPYNPILGE
TFRCLWIHPRTNSKTFYIAEQVSHHPPISAFYVSNRKDGFCLSGSILAKSKFYGNSLSAILEGEARLTFL
NRGEDYVMTMPYAHCKGILYGTMTLELGGTVNITCQKTGYSAILEFKLKPFLGSSDYVNQISGKLKLGKE
VLATLEGHWDSEVFINDKKTDNSEIFWNPTPDIKQWRLIRHTVKFEEQDDFESEKLWQRVTKAINAKDQT
EATQEKYVLEEAQRQAARDRKTKTQEWVCKLFELDPLTGEWHYKFSDTRPWDPLNDMIQFEKDGVIQTKV
KHRTPMVSVPKMKHKPTRQQKKVVKGYSSPEPDIQDSSGSEAQSVKPSTRRKKGIDLGDIQSSIESIKQT
QEEIKRNIMALRNHLLSSTPATDYFLQQKDYFVIFLLILLQVIINFIFK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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