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Report for CCDS36168.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36168.1 Public Mus musculus 11 Trim11 23 108 98 CCDS HistoryNCBI Gene:94091Re-query CCDS DB by CCDS ID:36168.1Re-query CCDS DB by GeneID:94091See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 36168.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000093061.6 ENSMUSP00000090749.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000093061.6Link to Ensembl Protein Viewer:ENSMUSP00000090749.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000093061Re-query CCDS DB by Protein ID:ENSMUSP00000090749
Original member Current member NCBI NM_053168.2 NP_444398.1 Accepted alive Link to Nucleotide Sequence:NM_053168.2Link to Protein Sequence:NP_444398.1Re-query CCDS DB by Nucleotide ID:NM_053168Re-query CCDS DB by Protein ID:NP_444398Link to BLAST:NP_444398.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_444398.1 467 Q99PQ2-1 467 100% 0 0

Chromosomal Locations for CCDS 36168.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 58978240 58978644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 58981241 58981336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 58981993 58982223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 58988725 58988747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 58988829 58988929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 58990187 58990734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1404 nt):
ATGGCTGCCCCAGACTTGTCCACCAACCTCCAGGAGGAGGCCACCTGCGCCATCTGCCTGGATTACTTCA
CCGACCCGGTGATGACCGACTGCGGCCACAACTTCTGCCGCGAGTGCATCCGACGTTGCTGGGGCCAGCC
CGAGGGCCCATACGCGTGCCCCGAGTGTCGCGAGCTGTCGGCGCAGAGGAACCTACGGCCCAACCGCCCG
CTCGCCAAAATGGCAGAAATGGCACGACGCCTGCACCCGCCTTCTCCGGTCCCGCAGGGCGTCTGTGCGG
CGCACCGCGAGCCGCTGACCACCTTCTGCGGCGACGACCTCAGCCTGCTGTGCCCCATCTGCGAGCGTTC
GGAGCACTGGACTCACCGGGTGAGACCGCTGCAGGAGGCGGCGGACGACCTCAAGGGGAGGCTGGAGAAG
TCACTGGAGCACCTACGGAAACAAATGGAGGACGCAATGCTGTTCCAAGCCCAGGCTGAGGAAACCTGTG
CCTTGTGGCAGAAGATGGTGGAGAGCCAGCGGCAGAATGTGCTGGGCGAGTTTGAGAGGCTGCGCCGCCT
GTTGGCAGAGGAGGAGCAACAGCTGCTGCAGAAGCTGGAGGAGGAAGAGCTGGAGGTTCTGCCGCGCCTG
CGTGAAGGCGCTGCGAGGCTTGGCCAGCAAAGCACGCAGCTGGCAGCCCTCATCTCCGAGCTTGAGAGCC
GCTGCCAGCTGCCAGCCCTGGGTTTACTGCAGGACATTAAGGACGCCCTGTGCAGGGTGCAGGATGTGAA
GCTGCAGCCTCCAGCAGTGGTGCCCATGGAGCTGAGGACCGTGTGCCGGGTCCCAGGGCTGGTGGAGACC
CTGCGGAGGTTCCGAGGGGACATAACCCTGGACCCAGACACCGCCAACCCTGAGCTGGTCTTATCTGAGG
ACCGGAGGAGTGTGCAGCGTGGTGAACAGCGGCAGGCCCTGCCTGACAACCCAGAGCGGTTCGACCCCGG
CCCTTGCGTGCTGGGCCAGGAGCGCATTACCTCTGGCCGCCACTACTGGGAGGTGGAAGTCGGGGACCAG
ACCAGCTGGGCACTCGGCGTGTGTAAAGAAACTGCCAACAGGAAGGAGAAGGGGGAGCTGTCGGCTGGCA
ATGGGTTCTGGATCCTGGTGTTCCTGGGGAGTTTCTATAATTCCAATGAGCCGGCCTTCTCCCCACTGCG
GGACCCTCCCAAGCGTGTGGGGATTTTTCTGGACTATGAAGCTGGCCATCTCTCATTCTACAGTGCCACG
GATGGGTCGCTGCTGTTTATCTTCCCCGAGACCCTGTTCTCAGGGACACTCCGGCCCCTCTTCTCACCTC
TGTCAAGCAGCCCGACCCCTATGACTATCTGCAGGCTGATAGGTGTATCTGGGGACACCCTTGGCCCGCA
GTGA

Translation (467 aa):
MAAPDLSTNLQEEATCAICLDYFTDPVMTDCGHNFCRECIRRCWGQPEGPYACPECRELSAQRNLRPNRP
LAKMAEMARRLHPPSPVPQGVCAAHREPLTTFCGDDLSLLCPICERSEHWTHRVRPLQEAADDLKGRLEK
SLEHLRKQMEDAMLFQAQAEETCALWQKMVESQRQNVLGEFERLRRLLAEEEQQLLQKLEEEELEVLPRL
REGAARLGQQSTQLAALISELESRCQLPALGLLQDIKDALCRVQDVKLQPPAVVPMELRTVCRVPGLVET
LRRFRGDITLDPDTANPELVLSEDRRSVQRGEQRQALPDNPERFDPGPCVLGQERITSGRHYWEVEVGDQ
TSWALGVCKETANRKEKGELSAGNGFWILVFLGSFYNSNEPAFSPLRDPPKRVGIFLDYEAGHLSFYSAT
DGSLLFIFPETLFSGTLRPLFSPLSSSPTPMTICRLIGVSGDTLGPQ


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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