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Report for CCDS3624.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3624.1 Public Homo sapiens 4 IBSP 24 110 108 CCDS HistoryNCBI Gene:3381Re-query CCDS DB by CCDS ID:3624.1Re-query CCDS DB by GeneID:3381See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3624.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000226284.7 ENSP00000226284.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000226284.7Link to Ensembl Protein Viewer:ENSP00000226284.5Re-query CCDS DB by Nucleotide ID:ENST00000226284Re-query CCDS DB by Protein ID:ENSP00000226284
Original member Current member NCBI NM_004967.4 NP_004958.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004967.4Link to Protein Sequence:NP_004958.2Re-query CCDS DB by Nucleotide ID:NM_004967Re-query CCDS DB by Protein ID:NP_004958Link to BLAST:NP_004958.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004958.2 317 P21815 317 100% 0 0

Chromosomal Locations for CCDS 3624.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 87802362 87802415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 87802508 87802558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 87802654 87802731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 87806122 87806184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 87810606 87810764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 87811362 87811910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (954 nt):
ATGAAGACTGCTTTAATTTTGCTCAGCATTTTGGGAATGGCCTGTGCTTTCTCAATGAAAAATTTGCATC
GAAGAGTCAAAATAGAGGATTCTGAAGAAAATGGGGTCTTTAAGTACAGGCCACGATATTATCTTTACAA
GCATGCCTACTTTTATCCTCATTTAAAACGATTTCCAGTTCAGGGCAGTAGTGACTCATCCGAAGAAAAT
GGAGATGACAGTTCAGAAGAGGAGGAGGAAGAAGAGGAGACTTCAAATGAAGGAGAAAACAATGAAGAAT
CGAATGAAGATGAAGACTCTGAGGCTGAGAATACCACACTTTCTGCTACAACACTGGGCTATGGAGAGGA
CGCCACGCCTGGCACAGGGTATACAGGGTTAGCTGCAATCCAGCTTCCCAAGAAGGCTGGGGATATAACA
AATAAAGCTACAAAAGAGAAGGAAAGTGATGAAGAAGAAGAGGAGGAAGAGGAAGGAAATGAAAACGAAG
AAAGCGAAGCAGAAGTGGATGAAAACGAACAAGGCATAAACGGCACCAGTACCAACAGCACAGAGGCAGA
AAACGGCAACGGCAGCAGCGGAGGAGACAATGGAGAAGAAGGGGAAGAAGAAAGTGTCACTGGAGCCAAT
GCAGAAGACACCACAGAGACCGGAAGGCAGGGCAAGGGCACCTCGAAGACAACAACCTCTCCAAATGGTG
GGTTTGAACCTACAACCCCACCACAAGTCTATAGAACCACTTCCCCACCTTTTGGGAAAACCACCACCGT
TGAATACGAGGGGGAGTACGAATACACGGGCGCCAATGAATACGACAATGGATATGAAATCTATGAAAGT
GAGAACGGGGAACCTCGTGGGGACAATTACCGAGCCTATGAAGATGAGTACAGCTACTTTAAAGGACAAG
GCTACGATGGCTATGATGGTCAGAATTACTACCACCACCAGTGA

Translation (317 aa):
MKTALILLSILGMACAFSMKNLHRRVKIEDSEENGVFKYRPRYYLYKHAYFYPHLKRFPVQGSSDSSEEN
GDDSSEEEEEEEETSNEGENNEESNEDEDSEAENTTLSATTLGYGEDATPGTGYTGLAAIQLPKKAGDIT
NKATKEKESDEEEEEEEEGNENEESEAEVDENEQGINGTSTNSTEAENGNGSSGGDNGEEGEEESVTGAN
AEDTTETGRQGKGTSKTTTSPNGGFEPTTPPQVYRTTSPPFGKTTTVEYEGEYEYTGANEYDNGYEIYES
ENGEPRGDNYRAYEDEYSYFKGQGYDGYDGQNYYHHQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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