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Report for CCDS36349.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36349.1 Public Mus musculus 11 Fmnl1 23 108 98 CCDS HistoryNCBI Gene:57778Re-query CCDS DB by CCDS ID:36349.1Re-query CCDS DB by GeneID:57778See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36349.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107027.8 ENSMUSP00000102642.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107027.8Link to Ensembl Protein Viewer:ENSMUSP00000102642.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000107027Re-query CCDS DB by Protein ID:ENSMUSP00000102642
Original member NCBI NM_019679.2 NP_062653.2 Updated not alive Link to Nucleotide Sequence:NM_019679.2Link to Protein Sequence:NP_062653.2Re-query CCDS DB by Nucleotide ID:NM_019679Re-query CCDS DB by Protein ID:NP_062653
Current member NCBI NM_019679.3 NP_062653.2 Accepted alive Link to Nucleotide Sequence:NM_019679.3Link to Protein Sequence:NP_062653.2Re-query CCDS DB by Nucleotide ID:NM_019679Re-query CCDS DB by Protein ID:NP_062653Link to BLAST:NP_062653.2

Chromosomal Locations for CCDS 36349.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 103171313 103171441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 103179516 103179599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 103180882 103180995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 103181709 103181782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 103182086 103182169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 103182642 103182767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 103185621 103185729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 103186411 103186487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 103186613 103186706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 103189926 103190000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 103190296 103190406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 103192015 103192164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 103192679 103192780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 103192950 103193202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 103193448 103193735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 103193928 103194052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 103194626 103194828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 103195259 103195493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 103195610 103195678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 103196261 103196341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 103196416 103196545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 103196685 103196848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 103197078 103197179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 103197315 103197395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 103197658 103197778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 103198135 103198226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3273 nt):
ATGGGCAACGCGGCTGGCAGCGCCGAACAGCCCGCGGGCCCCACCGCGTCGCCCCCGAAGCAGCCAGCCG
TCCCCAAGCAACCAATGCCGGCGGCCGGGGAGCTGGAGGAGAGGTTCACGCGGGTCTTGAACTGTATGAA
CTTGCCTCCAGACAAGGTCCAGCTGCTGAGCCAGTATGACAATGAGAAGAAATGGGAGCTCATCTGTGAC
CAGGAGCGGTTTCAAGTCAAGAATCCCCCTGCAGCCTACATCCAGAAGCTGAAGAGCTACCTGGATACCG
GTGGGGTCAGCCGAAAGGTAGCATCTGATTGGATGTCCAACCTGGGGTTTAAGAGGCGAGTTCAGGAGTC
TACACAGGTGCTGCGGGAACTGGAGACTTCCCTGAGGACAAACCACATTGGGTGGGTGCAGGAGTTCCTC
AATGAAGAGAACCGGGGTCTGGATGTCCTGCTTGAGTACCTGGCCTTTGCCCAGTGCTCTGTTGCATATG
ACATGGAAAGCACAGACAGTGTGGCCTCTGGTGCAGAGAAGAGCAAGCCCCTGGACCAGTCTGTGGAAGA
CCTCAGCAAGGCACCTCCCTCATCTGTGCCCAAAAGTCGCCTGACCATCAAGCTGACCCCTGCCCACAGC
AGGAAGGCGCTGAGGAATTCCCGAATCGTCAGCCAGAAGGATGATGTCCACGTGTGCATCATGTGTCTAA
GAGCCATCATGAACTACCAGTCCGGCTTCAGCCTTGTTATGAACCACCCAGCCTGTGTCAATGAGATCGC
TCTAAGCCTTAACAACAAGAGCCCCAGAACCAAGGCTCTGGTACTGGAGCTGCTGGCAGCTGTATGTCTC
GTGCGGGGAGGACACGACATCATCCTTGCGGCCTTTGACAACTTCAAGGAGGTTTGCGGGGAGCAGCACC
GATTTGAAAAGCTAATGGAGTATTTCCGGCACGAAGACAGCAACATTGACTTCATGGTGGCTTGCATGCA
ATTCATCAACATTGTGGTGCACTCTGTGGAGAATATGAACTTCCGTGTCTTCCTGCAATATGAGTTCACT
CACCTGGGTCTGGACCTGTACTTGGAGAGGCTCCGGCTCACTGAGAGTGACAAGCTGCAGGTGCAGATCC
AGGCGTATCTGGACAACGTTTTTGATGTGGGGACATTGTTGGAGGAGACAGAGACGAAGAATGCAGTGTT
GGAGCACATGGAGGAACTGCAGGAGCAGGTGGCAACGCTGACAGAGCGGCTTCGGGACACAGAGAACGAC
TCCATGGCCAAGATCGCTGAACTGGAGAAGCAGCTAAGCCAGGCTCGCAAGGAATTGGAGACCCTGAGGG
AGCGCTTCAGCGAGTCGACCCCCATGGGCACTTCCAGACGAATCCCTGAACCTGAGAAAGTGCCTGTCCC
TACCGTGGTGCGACCCTCGGCTCTAGAACTGAAGGTGGAGGAGCTTGAGGAAAAGGGGTTAATCCGCATC
CTGCGGGGGCCGGGGGACGTCGTTTCCATCGAGATCCTTCCAGGCGCTGCGGCGACACCAAGCGGTGACG
ACGCACAAGCTCCGAGGGTGTCCACTGATTCCCCTAGCACAGCAGAGTCAATTCCCGAAGCAGCATCACC
ACCGCCTCCGCCACCTCCACCACCACCTCCACTACCTAACCTCCAGTCCCAGCAGGAAGCCCCTCCCTCC
GCACCCCCGCTGGCCCCGCCCCTCCCAGGCTGCGCAGAGCCGCCACCTGCACCACCGTTGCCTGGAGACC
TGCCTCCCCCACCTCCGCCACCCCCACTTGGTACTGATGGACCAGTGCCACCGCCACCGCCACCGCCTCC
GGGAGGGCCCCCTGATATCCTTGGAGGACAAGGCCCAGATATCGGCCCAGGGGTGAAAGCCAAGAAACCC
ATCCAGACCAAGTTCCGGATGCCACTGCTTAACTGGGTGGCGCTGAAACCCAGCCAGATCACAGGCACTG
TCTTCACGGAGCTCAATGACGAGAAGGTGCTCCAGGAGCTAGACATGAATGACTTTGAGGAACACTTTAA
GACCAAATCCCAAGGTCCCTGCCTGGATATCAGCGCTCTGAAGGGGAAGGCCTCCCAGAAGGCCCCCACT
AAGACAATACTCATTGAAGCCAACCGGGCCAAGAATTTGGCTATCACCCTGCGCAAGGGCAACCTAGGAG
CAGACAGAATCTGCCAGGCCATCGAGACGTATGACCTACAGACTCTCAGCTTGGATTTCTTGGAGCTGTT
GACCCGCTTCCTGCCCACGGACTACGAGCGTAGCCTCATAGCCCGATTCGAGAAGGAACAGCGGCCGATG
GAAGAGCTGTCAGAGGAGGACCGCTTCATGCTTCGCTTCAGTCGCATCCAGAGACTTCCGGAGCGCATGA
ACACACTCACCTTCCTGGGCAACTTTCCAGACACGGCCCAGCTGCTCATGCCGCAACTGAACGCCATCAT
TGCAGCCTCTATGTCTATCAAGTCCTCTGACAAGCTTCGCCAGATCCTAGAGATTGTCCTGGCTTTTGGC
AACTACATGAACAGTAGCAAGCGTGGGGCAGCCTATGGTTTCCGACTTCAGAGTCTGGATGCGTTGTTGG
AGATGAAGTCGACCGACCGGAAACAGACGTTGTTGCACTACTTGGTGAAGGTCATTGCTGAGAAGTACCC
ACAGCTCACGGGTTTTCATAGTGATCTGCACTTTTTGGACAAGGCAGGCTCAGTGTCCCTGGACAGCGTA
CTGGGAGACGTGCGCTCCTTGCAGCGAGGTCTGGAGCTGACGCAGAGAGAGTTTGTGCGGCAAGATGACT
GCCTGGTGCTCAAGGAGTTCCTAAGGGCCAACTCTCCCACCATGGACAAGTTGCTGGCAGACAGCAAGAC
AGCTCAGGAGGCCTATGAGTCTGTGGTGGAGTACTTTGGAGAAAATCCCAAGACCACATCCCCCTCCATG
TTCTTTTCCCTCTTCAGTCGCTTCACCAAGGCCTACAAGAAAGCGGAACAGGAGGTCGAACAGTGGAAGA
AGGAAGCAGCTGCTGATACCTCAGGCAGGGAAGAGCCTCCAACACCCAAGTCTCCACCCAAGGCCCGGCG
ACAACAGATGGACCTCATCTCTGAGCTAAAACGGAAGCAGCAGAAAGAGCCACTCATCTACGAGAGTGAC
CGAGATGGGGCCATCGAGGACATCATCACAGTGCTGAAGACAGTGCCCTTCACTGCCCGCACCGGCAAGC
GGACATCCCGGCTCCTCTGTGAGGCCAGCCTGGGAGAGGAGATGACCCTTTAG

Translation (1090 aa):
MGNAAGSAEQPAGPTASPPKQPAVPKQPMPAAGELEERFTRVLNCMNLPPDKVQLLSQYDNEKKWELICD
QERFQVKNPPAAYIQKLKSYLDTGGVSRKVASDWMSNLGFKRRVQESTQVLRELETSLRTNHIGWVQEFL
NEENRGLDVLLEYLAFAQCSVAYDMESTDSVASGAEKSKPLDQSVEDLSKAPPSSVPKSRLTIKLTPAHS
RKALRNSRIVSQKDDVHVCIMCLRAIMNYQSGFSLVMNHPACVNEIALSLNNKSPRTKALVLELLAAVCL
VRGGHDIILAAFDNFKEVCGEQHRFEKLMEYFRHEDSNIDFMVACMQFINIVVHSVENMNFRVFLQYEFT
HLGLDLYLERLRLTESDKLQVQIQAYLDNVFDVGTLLEETETKNAVLEHMEELQEQVATLTERLRDTEND
SMAKIAELEKQLSQARKELETLRERFSESTPMGTSRRIPEPEKVPVPTVVRPSALELKVEELEEKGLIRI
LRGPGDVVSIEILPGAAATPSGDDAQAPRVSTDSPSTAESIPEAASPPPPPPPPPPPLPNLQSQQEAPPS
APPLAPPLPGCAEPPPAPPLPGDLPPPPPPPPLGTDGPVPPPPPPPPGGPPDILGGQGPDIGPGVKAKKP
IQTKFRMPLLNWVALKPSQITGTVFTELNDEKVLQELDMNDFEEHFKTKSQGPCLDISALKGKASQKAPT
KTILIEANRAKNLAITLRKGNLGADRICQAIETYDLQTLSLDFLELLTRFLPTDYERSLIARFEKEQRPM
EELSEEDRFMLRFSRIQRLPERMNTLTFLGNFPDTAQLLMPQLNAIIAASMSIKSSDKLRQILEIVLAFG
NYMNSSKRGAAYGFRLQSLDALLEMKSTDRKQTLLHYLVKVIAEKYPQLTGFHSDLHFLDKAGSVSLDSV
LGDVRSLQRGLELTQREFVRQDDCLVLKEFLRANSPTMDKLLADSKTAQEAYESVVEYFGENPKTTSPSM
FFSLFSRFTKAYKKAEQEVEQWKKEAAADTSGREEPPTPKSPPKARRQQMDLISELKRKQQKEPLIYESD
RDGAIEDIITVLKTVPFTARTGKRTSRLLCEASLGEEMTL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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