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Report for CCDS36380.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36380.1 Public Mus musculus 11 St6galnac1 23 108 98 CCDS HistoryNCBI Gene:20445Re-query CCDS DB by CCDS ID:36380.1Re-query CCDS DB by GeneID:20445See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36380.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000009732.7 ENSMUSP00000009732.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000009732.7Link to Ensembl Protein Viewer:ENSMUSP00000009732.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000009732Re-query CCDS DB by Protein ID:ENSMUSP00000009732
Original member Current member NCBI NM_011371.2 NP_035501.2 Accepted alive Link to Nucleotide Sequence:NM_011371.2Link to Protein Sequence:NP_035501.2Re-query CCDS DB by Nucleotide ID:NM_011371Re-query CCDS DB by Protein ID:NP_035501Link to BLAST:NP_035501.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035501.2 526 Q9QZ39 526 100% 0 0

Chromosomal Locations for CCDS 36380.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 116765731 116765922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116766073 116766172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116766259 116766348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116766538 116766641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116766978 116767116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116767681 116767852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116767945 116768113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116768871 116769369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116775287 116775402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1581 nt):
ATGACGAGATATTGCAGAGGACTTTCCCAGAGGCAAGCTTTCCTGCTTCTGACTGTGTTGGCATTGCTCT
TTATTCTGCTCTTCGTTGTTAAGGATCCAAGGGCAAAAGATTCCAGGTGCCAGTTCATATGGAAGAATGA
CGCAAGTGCCCAGGAGAATCAACAAAAGGCTGAGCCCCAAGTACCCATCATGACACTGTCACCCAGAGTT
CACAACAAGGAGACAACCTCTGTCAGTTCAAAGGACCTGAAGAAACAGGAGAGAGAGGCAGTCCAAGGAG
AGCAAGCTGAGGGGAAGGAGAAGAGGAAGTTGGAGACCATAAGGCCAGCACCAGAGAATCCTCAGAGCAA
GGCAGAGCCTGCTGCAAAGACGCCTGTGTCAGAACACCTGGACAAACTACCCAGAGCTCCAGGAGCACTG
TCAACAAGGAAGACACCAATGGCCACAGGAGCTGTCCCAGCTAAGAAGAAAGTGGTCCAGGCTACCAAAT
CCCCTGCCTCTTCCCCACACCCCACCACACGAAGAAGGCAAAGGCTGAAGGCCTCTGAGTTCAAGTCTGA
GCCTCGGTGGGATTTTGAGGAGGAATATAGCTTGGATATGAGCAGCCTGCAGACGAACTGCTCTGCTTCT
GTGAAGATCAAGGCCTCCAAGTCACCATGGCTACAGAATATCTTTCTGCCCAACATCACTCTGTTCCTGG
ACTCTGGACGCTTCACCCAGAGCGAGTGGAACCGTCTAGAGCACTTCGCTCCTCCCTTTGGCTTCATGGA
ACTCAATCAGTCCCTGGTACAGAAGGTGGTGACCCGCTTCCCTCCAGTTCGCCAGCAGCAGCTCCTCCTG
GCCAGCCTCCCTACTGGGTACTCCAAGTGTATCACCTGTGCTGTAGTGGGCAACGGGGGCATCCTGAATG
ATTCACGTGTTGGCCGGGAGATAGACAGCCATGACTATGTTTTCCGACTGAGTGGAGCCGTTATTAAAGG
ATATGAACAGGATGTGGGGACCCGGACATCCTTCTATGGCTTCACTGCTTTCTCTCTGACCCAGTCTATC
CTCATTTTGGGTAGACGAGGCTTCCAGCATGTGCCTCTGGGAAAGGACGTCCGATATCTACACTTCCTGG
AAGGCACCCGGGACTATGAGTGGCTGGAAGCTATGTTTTTGAATCAGACCTTGGCAAAAACCCACCTTTC
CTGGTTCAGGCATAGGCCTCAGGAAGCCTTCCGGAATGCCTTGGACTTGGATCGATACTTGCTGCTGCAC
CCAGACTTTCTCCGTTACATGAAGAACAGGTTTCTGAGGTCAAAGACCCTGGACACTGCCCATTGGAGAA
TATACCGCCCCACCACTGGTGCCCTCCTGCTGCTCACAGCCCTTCATCTCTGTGACAAGGTCAGCGCCTA
TGGCTTCATCACCGAGGGCCACCAGCGCTTCTCTGACCACTACTATGATACATCGTGGAAAAGGTTGATC
TTTTATATCAACCATGACTTCAGGTTAGAGAGAATGGTGTGGAAGCGGTTGCATGATGAAGGCATCATCT
GGCTCTACCAGCGTCCACAAAGTGACAAAGCAAAGAACTGA

Translation (526 aa):
MTRYCRGLSQRQAFLLLTVLALLFILLFVVKDPRAKDSRCQFIWKNDASAQENQQKAEPQVPIMTLSPRV
HNKETTSVSSKDLKKQEREAVQGEQAEGKEKRKLETIRPAPENPQSKAEPAAKTPVSEHLDKLPRAPGAL
STRKTPMATGAVPAKKKVVQATKSPASSPHPTTRRRQRLKASEFKSEPRWDFEEEYSLDMSSLQTNCSAS
VKIKASKSPWLQNIFLPNITLFLDSGRFTQSEWNRLEHFAPPFGFMELNQSLVQKVVTRFPPVRQQQLLL
ASLPTGYSKCITCAVVGNGGILNDSRVGREIDSHDYVFRLSGAVIKGYEQDVGTRTSFYGFTAFSLTQSI
LILGRRGFQHVPLGKDVRYLHFLEGTRDYEWLEAMFLNQTLAKTHLSWFRHRPQEAFRNALDLDRYLLLH
PDFLRYMKNRFLRSKTLDTAHWRIYRPTTGALLLLTALHLCDKVSAYGFITEGHQRFSDHYYDTSWKRLI
FYINHDFRLERMVWKRLHDEGIIWLYQRPQSDKAKN


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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