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Report for CCDS36402.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36402.1 Reviewed, update pending Mus musculus 12 Laptm4a 23 108 98 CCDS HistoryNCBI Gene:17775Re-query CCDS DB by CCDS ID:36402.1Re-query CCDS DB by GeneID:17775See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 36402.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020909.3 ENSMUSP00000020909.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020909.3Link to Ensembl Protein Viewer:ENSMUSP00000020909.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000020909Re-query CCDS DB by Protein ID:ENSMUSP00000020909
Original member NCBI NM_008640.2 NP_032666.2 Updated not alive Link to Nucleotide Sequence:NM_008640.2Link to Protein Sequence:NP_032666.2Re-query CCDS DB by Nucleotide ID:NM_008640Re-query CCDS DB by Protein ID:NP_032666
Current member NCBI NM_008640.3 NP_032666.3 Pending alive Link to Nucleotide Sequence:NM_008640.3Link to Protein Sequence:NP_032666.3Re-query CCDS DB by Nucleotide ID:NM_008640Re-query CCDS DB by Protein ID:NP_032666Link to BLAST:NP_032666.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032666.3 233 Q60961-1 233 99.5708% 0 1

Chromosomal Locations for CCDS 36402.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 8921959 8922294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 8931628 8931748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 8934696 8934772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 8934866 8934988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 8935987 8936082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 8936697 8936795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 8938117 8938191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (927 nt):
ATGTGGCAGAAGGCGGAGGGAGAGATTCCGAGCCGACGTCCCGCGAGAGCGGCGCCGGGCGCCCAGAGCG
CAGGCGCACAGGAGTTGGCAAGGGCCCGGGCCGAGGGCGGGCCAGAAGACGCGTCCTTTGGCTGTGGACA
CCGTCGTAGAGTCGTCTGGGTTGAACCGCTGGGCCGAAAGCTTTTGTCAGGGGCCTGGGCGAGAACGAGG
CCCGCGAGGTTCCGGATGGTGTCCATGACTTTCAAACGGAGCCGCAGCGACCGGTTCTACAGCACCCGGT
GCTGCGGCTGTTGCCATGTCCGCACCGGGACGATCATCCTGGGGACCTGGTACATGGTGGTCAACCTGTT
GATGGCCATTTTGCTGACCGTGGAGGTGACTCATCCAAATTCCATGCCAGCTGTCAACATTCAGTATGAA
GTCATTGGTAATTACTATTCATCTGAGAGAATGGCTGATAATGCCTGCGTTCTTTTTGCCGTCTCTGTTC
TTATGTTTATAATCAGTTCAATGCTGGTTTATGGAGCCATTTCTTATCAAGTGGGCTGGCTGATTCCTTT
CTTCTGCTACCGACTCTTTGACTTCGTTCTCAGTTGTCTGGTGGCCATCAGTTCTCTCACTTACTTGCCA
AGAATCAAAGAATATCTGGATCAGTTGCCTGATTTCCCATACAAAGATGACCTCCTGGCATTGGACTCCA
GCTGCCTCCTGTTCATCGTCCTTGTGTTCTTTGTGGTATTCATCATTTTTAAGGCTTACCTAATCAATTG
TGTTTGGAACTGCTACAAATACATCAACAACAGAAATGTGCCAGAGATTGCCGTGTACCCTGCCTTTGAA
ACACCTCCACAGTATGTTTTGCCAACCTATGAAATGGCTGTGAAGATTCCTGAGAAAGAGCCACCACCTC
CTTACCTGCCTGCCTGA

Translation (308 aa):
MWQKAEGEIPSRRPARAAPGAQSAGAQELARARAEGGPEDASFGCGHRRRVVWVEPLGRKLLSGAWARTR
PARFRMVSMTFKRSRSDRFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSMPAVNIQYE
VIGNYYSSERMADNACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVAISSLTYLP
RIKEYLDQLPDFPYKDDLLALDSSCLLFIVLVFFVVFIIFKAYLINCVWNCYKYINNRNVPEIAVYPAFE
TPPQYVLPTYEMAVKIPEKEPPPPYLPA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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