NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS36594.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36594.1 Public Mus musculus 13 Ero1b 23 108 98 CCDS HistoryNCBI Gene:67475Re-query CCDS DB by CCDS ID:36594.1Re-query CCDS DB by GeneID:67475See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36594.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000071973.7 ENSMUSP00000071864.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000071973.7Link to Ensembl Protein Viewer:ENSMUSP00000071864.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000071973Re-query CCDS DB by Protein ID:ENSMUSP00000071864
Original member NCBI NM_026184.2 NP_080460.2 Updated not alive Link to Nucleotide Sequence:NM_026184.2Link to Protein Sequence:NP_080460.2Re-query CCDS DB by Nucleotide ID:NM_026184Re-query CCDS DB by Protein ID:NP_080460
Current member NCBI NM_026184.3 NP_080460.2 Accepted alive Link to Nucleotide Sequence:NM_026184.3Link to Protein Sequence:NP_080460.2Re-query CCDS DB by Nucleotide ID:NM_026184Re-query CCDS DB by Protein ID:NP_080460Link to BLAST:NP_080460.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080460.2 467 Q8R2E9 467 100% 0 0

Chromosomal Locations for CCDS 36594.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 12566077 12566178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 12574820 12574939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 12579176 12579259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 12580374 12580415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 12581669 12581751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 12583537 12583610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 12590761 12590881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 12590985 12591031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 12593508 12593519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 12595698 12595724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 12599861 12599953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 12600087 12600333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 12601736 12601805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 12602311 12602397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 12604328 12604461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 12606827 12606887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1404 nt):
ATGAGTCCGGGGTTCCGCCGGGCCGTTACTGGGCAGGGGGCGGCGGCCGCGGTGCAACTGCTTGTCACCC
TGAGCTTCCTCTCAAGTCTGGTCAAGACTCAGGTGACTGGAGTTCTGGATGATTGCTTATGTGACATTGA
CAGCATTGATAAATTCAACACCTACAAAATCTTTCCCAAAATAAAGAAGTTACAAGAACGAGACTATTTT
CGTTATTACAAGGTTAATCTGAAACGACCATGTCCTTTCTGGGCAGAAGATGGCCACTGCTCAATAAAAG
ACTGTCATGTGGAGCCCTGTCCAGAAAGTAAAATTCCAGTTGGAATTAAAGCCGGGCGTTCAAATAAGTA
CTCGCAAGCAGCAAACAGCACCAAAGAACTGGATGACTGTGAGCAGGCTAACAAACTGGGCGCCATCAAC
AGCACGCTAAGTAACGAAAGCAAAGAAGCGTTCATTGACTGGGCGAGATATGATGATTCGCAGGACCACT
TTTGTGAACTTGATGATGAGCGGTCTCCTGCTGCACAGTATGTGGACCTGCTGCTGAACCCGGAACGGTA
CACTGGCTACAAGGGCTCCTCAGCATGGAGGGTGTGGAACAGCATCTATGAAGAAAACTGCTTCAAGCCT
CGATCTGTTTATCGTCCTTTAAATCCTTTGGCGCCCAGCAGAGGGGAAGATGATGGAGAATCATTCTATA
CGTGGCTAGAAGGTTTGTGTCTTGAGAAAAGAGTCTTCTATAAGCTTATATCAGGACTCCATGCCAGCAT
CAATTTACATCTGTGTGCAAACTACCTTCTGGAAGAAACCTGGGGGAAACCTAGTTGGGGACCAAACATC
AAGGAGTTTAGACGCCGCTTTGACCCTGTGGAAACAAAGGGGGAAGGTCCAAGGAGGCTAAAGAACCTGT
ACTTTTTATACTTGATAGAGCTCCGTGCTTTGTCAAAGGTGGCCCCTTACTTTGAGCGCTCGATTGTTGA
TCTCTATACTGGCAATGTGGAAGATGATGCCGACACCAAGACCCTTCTGCTCAGCATCTTTCAGGATACA
AAGTCCTTTCCTATGCACTTCGATGAGAAATCCATGTTTGCAGGTGACAAAAAGGGGGCCAAGTCATTAA
AGGAAGAATTCCGGTTACATTTCAAGAACATCTCCCGGATCATGGACTGTGTTGGGTGCGATAAATGCAG
ACTGTGGGGGAAACTGCAGACTCAGGGTTTAGGAACTGCCTTGAAGATCCTCTTCTCTGAAAAGGAAATC
CAAAACCTTCCGGAGAACAGCCCATCCAAAGGCTTCCAGCTCACTCGGCAGGAAATCGTTGCTCTTTTAA
ATGCTTTTGGAAGACTTTCTACAAGCATAAGAGAATTACAGAACTTTAAAGCGTTGTTGCAGCACAGGAG
GTAA

Translation (467 aa):
MSPGFRRAVTGQGAAAAVQLLVTLSFLSSLVKTQVTGVLDDCLCDIDSIDKFNTYKIFPKIKKLQERDYF
RYYKVNLKRPCPFWAEDGHCSIKDCHVEPCPESKIPVGIKAGRSNKYSQAANSTKELDDCEQANKLGAIN
STLSNESKEAFIDWARYDDSQDHFCELDDERSPAAQYVDLLLNPERYTGYKGSSAWRVWNSIYEENCFKP
RSVYRPLNPLAPSRGEDDGESFYTWLEGLCLEKRVFYKLISGLHASINLHLCANYLLEETWGKPSWGPNI
KEFRRRFDPVETKGEGPRRLKNLYFLYLIELRALSKVAPYFERSIVDLYTGNVEDDADTKTLLLSIFQDT
KSFPMHFDEKSMFAGDKKGAKSLKEEFRLHFKNISRIMDCVGCDKCRLWGKLQTQGLGTALKILFSEKEI
QNLPENSPSKGFQLTRQEIVALLNAFGRLSTSIRELQNFKALLQHRR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH