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Report for CCDS3663.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3663.1 Public Homo sapiens 4 BDH2 24 110 108 CCDS HistoryNCBI Gene:56898Re-query CCDS DB by CCDS ID:3663.1Re-query CCDS DB by GeneID:56898See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3663.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000296424.9 ENSP00000296424.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000296424.9Link to Ensembl Protein Viewer:ENSP00000296424.4Re-query CCDS DB by Nucleotide ID:ENST00000296424Re-query CCDS DB by Protein ID:ENSP00000296424
Original member Current member NCBI NM_020139.4 NP_064524.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020139.4Link to Protein Sequence:NP_064524.3Re-query CCDS DB by Nucleotide ID:NM_020139Re-query CCDS DB by Protein ID:NP_064524Link to BLAST:NP_064524.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_064524.3 245 Q9BUT1-1 245 100% 0 0

Chromosomal Locations for CCDS 3663.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 103079702 103079755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 103082081 103082173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 103082871 103082929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 103085349 103085462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 103086480 103086540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 103091177 103091285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 103092600 103092696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 103095203 103095281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 103096183 103096254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (738 nt):
ATGGGTCGACTTGATGGGAAAGTCATCATCCTGACGGCCGCTGCTCAGGGGATTGGCCAAGCAGCTGCCT
TAGCTTTTGCAAGAGAAGGTGCCAAAGTCATAGCCACAGACATTAATGAGTCCAAACTTCAGGAACTGGA
AAAGTACCCGGGTATTCAAACTCGTGTCCTTGATGTCACAAAGAAGAAACAAATTGATCAGTTTGCCAAT
GAAGTTGAGAGACTTGATGTTCTCTTTAATGTTGCTGGTTTTGTCCATCATGGAACTGTCCTGGATTGTG
AGGAGAAAGACTGGGACTTCTCGATGAATCTCAATGTGCGCAGCATGTACCTGATGATCAAGGCATTCCT
TCCTAAAATGCTTGCTCAGAAATCTGGCAATATTATCAACATGTCTTCTGTGGCTTCCAGCGTCAAAGGA
GTTGTGAACAGATGTGTGTACAGCACAACCAAGGCAGCCGTGATTGGCCTCACAAAATCTGTGGCTGCAG
ATTTCATCCAGCAGGGCATCAGGTGCAACTGTGTGTGCCCAGGAACAGTTGATACGCCATCTCTACAAGA
AAGAATACAAGCCAGAGGAAATCCTGAAGAGGCACGGAATGATTTCCTGAAGAGACAAAAGACGGGAAGA
TTCGCAACTGCAGAAGAAATAGCCATGCTCTGCGTGTATTTGGCTTCTGATGAATCTGCTTATGTAACTG
GTAACCCTGTCATCATTGATGGAGGCTGGAGCTTGTGA

Translation (245 aa):
MGRLDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEKYPGIQTRVLDVTKKKQIDQFAN
EVERLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSGNIINMSSVASSVKG
VVNRCVYSTTKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSLQERIQARGNPEEARNDFLKRQKTGR
FATAEEIAMLCVYLASDESAYVTGNPVIIDGGWSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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