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Report for CCDS3665.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3665.2 Public Homo sapiens 4 CXXC4 24 110 108 CCDS HistoryNCBI Gene:80319Re-query CCDS DB by CCDS ID:3665.2Re-query CCDS DB by GeneID:80319See the combined annotation on chromosome 4 in Sequence Viewer

Public Note for CCDS 3665.1
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript and conservation data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 3665.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000394767.3 ENSP00000378248.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000394767.3Link to Ensembl Protein Viewer:ENSP00000378248.2Re-query CCDS DB by Nucleotide ID:ENST00000394767Re-query CCDS DB by Protein ID:ENSP00000378248
Original member Current member NCBI NM_025212.4 NP_079488.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_025212.4Link to Protein Sequence:NP_079488.2Re-query CCDS DB by Nucleotide ID:NM_025212Re-query CCDS DB by Protein ID:NP_079488Link to BLAST:NP_079488.2

Chromosomal Locations for CCDS 3665.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 104472322 104472366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 104490744 104491802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1104 nt):
ATGAACACCAATGTCTGCGTGGAGCCCGGGCCGAGCCCGGAGGCCCCGGGCTTGCCCAAGGAAAGCCACT
TGCCCGAGGGGGCTCTGAACAGCCTTGTGGATTACAACTCGGAAATGGAGCGCTACCGCTCCTTTGCCAC
CTCCTTCTACAAGACCAACGGGGGCGCCTTCCCACAGGCGGCCAAGATCGCGCGCATCACCACCCCCATC
TTCCCCAGCAGCGCCGCCGCCGCCGCGGCCGCCGCGCGCATCGGCATGTCCCCCTGGAACTGCGACAACG
CGGCCACCGCCGCCGCCGCCACCGCCATGCTCTGGGGCAGCGGCGGGGGCGGGGGCGGCGGCGGGGGGGG
TGGCGGCGGCGGCGGCGGCGGCGGAGGCGGGGGCGGGGGTGGTGGGGGCGGCAGGAAATCCTCCTCCGCC
GCCGCCTCCTCCTCCGCCTCCTCCTCCTCGGCGATCCTCCCCGCCGGCGGTGGCGGCGGCGGCGGCGGCG
GCGGCAGCAGGACCAGCATGCACCACCGAAACGACTCCCAGAGGCTGGGGAAAGCTGGCTGCCCGCCAGA
GCCGTCGTTGCAAATGGCAAATACTAATTTCCTCTCCACCTTATCCCCTGAACACTGCAGACCTTTGGCG
GGGGAATGCATGAACAAGCTCAAATGCGGCGCTGCTGAAGCAGAGATAATGAATCTCCCCGAGCGCGTGG
GGACTTTTTCCGCTATCCCGGCTTTAGGGGGCATCTCATTACCTCCAGGGGTCATCGTCATGACAGCCCT
TCACTCCCCCGCAGCAGCCTCAGCAGCCGTCACAGACAGTGCGTTTCAAATTGCCAATCTGGCAGACTGC
CCGCAGAATCATTCCTCCTCCTCCTCGTCCTCCTCAGGGGGAGCTGGCGGAGCCAACCCAGCCAAGAAGA
AGAGGAAAAGGTGTGGGGTCTGCGTGCCCTGCAAGAGGCTCATCAACTGTGGCGTCTGCAGCAGTTGCAG
GAACCGCAAAACGGGACACCAGATCTGCAAATTTAGAAAATGTGAAGAGCTAAAGAAAAAACCTGGCACT
TCACTAGAGAGAACACCTGTTCCCAGCGCTGAAGCATTCCGATGGTTCTTTTAA

Translation (367 aa):
MNTNVCVEPGPSPEAPGLPKESHLPEGALNSLVDYNSEMERYRSFATSFYKTNGGAFPQAAKIARITTPI
FPSSAAAAAAAARIGMSPWNCDNAATAAAATAMLWGSGGGGGGGGGGGGGGGGGGGGGGGGGGGRKSSSA
AASSSASSSSAILPAGGGGGGGGGGSRTSMHHRNDSQRLGKAGCPPEPSLQMANTNFLSTLSPEHCRPLA
GECMNKLKCGAAEAEIMNLPERVGTFSAIPALGGISLPPGVIVMTALHSPAAASAAVTDSAFQIANLADC
PQNHSSSSSSSSGGAGGANPAKKKRKRCGVCVPCKRLINCGVCSSCRNRKTGHQICKFRKCEELKKKPGT
SLERTPVPSAEAFRWFF


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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