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Report for CCDS36880.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36880.1 Public Mus musculus 14 Wapl 23 108 98 CCDS HistoryNCBI Gene:218914Re-query CCDS DB by CCDS ID:36880.1Re-query CCDS DB by GeneID:218914See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36880.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048263.13 ENSMUSP00000040232.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048263.13Link to Ensembl Protein Viewer:ENSMUSP00000040232.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000048263Re-query CCDS DB by Protein ID:ENSMUSP00000040232
Original member Current member EBI ENSMUST00000169910.7 ENSMUSP00000130547.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000169910.7Link to Ensembl Protein Viewer:ENSMUSP00000130547.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000169910Re-query CCDS DB by Protein ID:ENSMUSP00000130547
Original member Current member NCBI NM_001004436.4 NP_001004436.2 Accepted alive Link to Nucleotide Sequence:NM_001004436.4Link to Protein Sequence:NP_001004436.2Re-query CCDS DB by Nucleotide ID:NM_001004436Re-query CCDS DB by Protein ID:NP_001004436Link to BLAST:NP_001004436.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001004436.2 1200 Q65Z40 1200 100% 0 0

Chromosomal Locations for CCDS 36880.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 34676976 34677474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34691682 34692734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34694987 34695105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34722264 34722359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34724706 34724858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34725128 34725264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34725900 34726011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34729180 34729407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34730549 34730660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34731509 34731609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34733731 34733807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34736670 34736845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34737271 34737386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34737856 34738020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34739231 34739438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34741057 34741145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34744809 34744904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34745625 34745690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3603 nt):
ATGACATCCAGATTTGGAAAAACTTACAGTAGGAAAGGAGGAAATGGCAGTTCAAAATTTGATGAAGTTT
TTTCCAACAAACGGACTACTCTTAGTACAAAATGGGGTGAGACCACATTTATGGCTAAATTAGGGCAGAA
GAGGCCCAATTTCAAACCAGATATTCAAGAAATTCCGAAGAAACCTAAAGTAGAAGAAGAAGATACTGGA
GATCCCTTTGGTTTTGATAGTGATGATGAGTCTCTACCTGTTTCTTCAAAAAATTTAGCCCAGGGTAAGG
GTTCATCTTACTCAGAATCTAGTGAGGCTGCTCAGCTGGAAGAAGTCACTTCTGTATTTGAAGCTAATAG
CAAATGTAGTCATGTGGTGGGTGAAGACAGTTTTGCTTCCGACAGATGCTTACTTGTGGAGGATACTTTA
ATTGGGAAAGAGAAGAGCATAAGTAGAATTCCAGAAGACAACGCAAACAAAAGTAGTTGCACTAAGTTGC
TAACTTCAGATAAAGTGGAGAATTTTAGTGAAGAACATGAAAAAAATAGTCACCACTTTCACAAAAATGC
TGAAGATAGTACTAAGAAACCCAATGCAGAAACCGCAGTGGCTTCTGAATATAAAGCTGATGAAACTAAA
GAAACAAATGATACTTGGAACTCCCAGTCTGGAAAAAGAACAGAGTCTCCATCTGAAAGTTGTCCAGTCA
AAGGATCTGTAAGAACTGGTTTATATGAATGGGATAATGATTTTGAAGATATCAGGTCAGAAGACTGTAT
TTTAAGTTTGGATAATGAGTCTCTTTTGGAGATGAAAGACGAGGATTTAAAAAATCGGATTGGAGGATTG
GAAAATCTAAATGAAACCTTTGAAGAAGATATCATACAAAGTGTTCTTAGGCCAAGCAACTGTAGGACGT
ACTGTAGGGCCAATAAAGCGAGATCCTCACAGGGAGCATCAAATTTTGATAAGCTAATGGATGGCACCAG
TCAGTCCTTAGCCAAAGCAAACAGTGAATCAAGTAAAGATGGCCTGAATCAGGCAAAGAAAGGTAGTGCA
AGTTGTGGGACCAGTTTTCGAGGAACAGTTGGACGGACTAGAGATTACACTGTTTTACATCCATCTTGCT
TGTCAGTGTGTAATGTTACCATCCAGGATACTATGGAACGGAGTATGGATGAGTTCACCGCATCCACTCC
TGCAGATTTAGGAGAGGCTGGCCGGCTCAGAAAAAAGGCAGATATTGCAACCTCCAAGACCACTACTAGA
TTTCGACCTAGTAATACTAAATCCAAAAAGGATGTTAAACTTGAATTTTTTGGTTTTGAAGATCATGATG
AGACAGGAGGTGATGAAGGGGGTTCTGGAAGTTCTAATTACAAAATTAAATATTTTGGCTTTGACGATCT
CAGCGAAAGTGAAGATGATGATGATGACGACTGTCAAGTGGAAAGAAAGAAAGACAAAAAAAGAACTAAA
ACAGCTCCATCACCTTCCCAGCAGCCTCCTCCTGAAAGCAGCGACAATTCCCAGGATAGTCAGTCTAGTA
CTAATAATGCAGAAAACTTGGATTTTACAGAGGACTTGCCTGGTGTGCCTGAGAGTGTGAAGAAGCCCAT
AAGTAAACAAGGAGATAAATCCAAGGAAAATACCAGAAAGATTTTTAGTGGCCCCAAACGGTCACCTACA
AAAGCTGTATATAATGCCAGGCATTGGAACCATCCAGACTCGGAAGAATTGCCTGGACCACCAATAGCAA
AACCTCAGCGTGTCACAGTGAGGCTGTCTTCAAAGGAACCAAATCAAAAAGATGATGGAGTTTTTAAGGC
TCCTGCACCACCACTCAAAGTGATAAAAACTGTGACAATACCTACTCAGCCCTACCAAGAAATAGTTACT
GCACTGAAATGCAGAAAAGAAGACAAAGAATTATATACTGTTGTTCAGCACGTGAAACACTTCAATGATG
TGGTGGAATTTGGTGAAAATCAAGAGTTCACTGATGACATTGAATACTTGTTAAGTGGCTTAAAGAGTAC
TCAGCCTCTAAACACACGTTGCCTTAGTGTTATCAGCTTAGCTACTAAATGTGCCATGCCCAGTTTTCGG
ATGCATCTGAGGGCACATGGGATGGTTGCAATGGTCTTTAAAACTTTGGATGATTCCCAGCATCATCAGA
ATCTGTCCCTCTGTACAGCTGCTCTCATGTACATATTGAGTAGAGACCGTTTGAACATGGATCTTGATAG
GGCCAGCCTAGATCTCATGATTCGGCTTTTGGAGTTGGAACAAGATGCCTCTTCAGCTAAGCTACTGAAT
GAAAAAGACATGAACAAGATCAAAGAAAAGATCCGAAGACTCTGTGAAACTGTGCACAACAAGCATCTTG
ATCTAGAAAACATAACGACTGGTCATTTAGCTATGGAGACATTGCTGTCCCTCACTTCCAAACGAGCAGG
AGATTGGTTTAAAGAAGAGCTCCGACTTCTGGGTGGTCTGGATCATATTGTAGATAAAGTAAAAGAGTGT
GTGGATCATTTAAGTAGAGATGATGAGGACGAAGAGAAACTAGTAGCCTCATTATGGGGAGCAGAGAGAT
GTTTACGAGTTTTAGAGAGTGTAACAGTGCATAATCCAGAGAATCAAAGCTACTTGATAGCCTATAAAGA
TTCACAACTCATTATTTCATCAGCTAAAGCATTACAGCATTGTGAAGACCTGATTCAGCAGTACAACCGT
GCTGAGAACAGCATCTGTGTAGCAGACAGTAACCCTCTGCCTTACCAGAATGTAACTAACCATGTGGGCA
AAGCAGTGGAGGACTGCATGAGGGCTATAATTGGAGTATTGCTCAATTTAACTAATGATAATGAGTGGGG
CAGCACAAAGACAGGAGAACAAGAAGGACTCATAGGCACAGCGATGAACTGTGTTCTTCAGGTTCCAAAG
TACCTACCTCAGGAGCAGAGATTTGATATTCGAGTGCTGGGATTGGGTCTACTCATAAACCTGGTGGAGT
ATAGTGCCCGGAATCGACACTGCCTTGTCAACATGCAAACATCCTGTTCCTTTGATTCCTCCTTCTCTAG
TGGAGAAGGCGATCATAGTTTAAGGCTAGCCGGACAAGTTCATGCTGTTCAAGCTTTAGTGCAGCTATTT
CTCGAACGAGAGAGAGCAGCACAATTGGCAGAAAGTAAAACAGATGAATTGATTAAAGATGCTCCTACCA
CTCAGCATGATAAGAGTGGAGAGTGGCAAGAAACAAGTGGAGAAATACAGTGGGTATCAACTGAAAAGAC
TGATGGTGCAGAGGAGAAGCAGAAGAAGGAGGAGGAGGATGAAGAACTTGACCTCAATAAAGCCCTTCAG
CATGCTGGCAAACACATGGAGGATTGCATCGTAGCCTCCTACACAGCCCTGCTTCTTGGGTGTCTCTGCC
AGGAAAGTCCAATCAATGTAACTACAGTAAGGGAATATCTTCCAGAAGGAGATTTCTCCATAATGACAGA
GATGCTTAAAAAGTTCTTAAGCTTCATGAATCTTACGTGTGCTGTTGGAACAACAGGCCAGAAGTCTATC
TCTAGAGTGATTGAATATTTGGAACATTGCTAG

Translation (1200 aa):
MTSRFGKTYSRKGGNGSSKFDEVFSNKRTTLSTKWGETTFMAKLGQKRPNFKPDIQEIPKKPKVEEEDTG
DPFGFDSDDESLPVSSKNLAQGKGSSYSESSEAAQLEEVTSVFEANSKCSHVVGEDSFASDRCLLVEDTL
IGKEKSISRIPEDNANKSSCTKLLTSDKVENFSEEHEKNSHHFHKNAEDSTKKPNAETAVASEYKADETK
ETNDTWNSQSGKRTESPSESCPVKGSVRTGLYEWDNDFEDIRSEDCILSLDNESLLEMKDEDLKNRIGGL
ENLNETFEEDIIQSVLRPSNCRTYCRANKARSSQGASNFDKLMDGTSQSLAKANSESSKDGLNQAKKGSA
SCGTSFRGTVGRTRDYTVLHPSCLSVCNVTIQDTMERSMDEFTASTPADLGEAGRLRKKADIATSKTTTR
FRPSNTKSKKDVKLEFFGFEDHDETGGDEGGSGSSNYKIKYFGFDDLSESEDDDDDDCQVERKKDKKRTK
TAPSPSQQPPPESSDNSQDSQSSTNNAENLDFTEDLPGVPESVKKPISKQGDKSKENTRKIFSGPKRSPT
KAVYNARHWNHPDSEELPGPPIAKPQRVTVRLSSKEPNQKDDGVFKAPAPPLKVIKTVTIPTQPYQEIVT
ALKCRKEDKELYTVVQHVKHFNDVVEFGENQEFTDDIEYLLSGLKSTQPLNTRCLSVISLATKCAMPSFR
MHLRAHGMVAMVFKTLDDSQHHQNLSLCTAALMYILSRDRLNMDLDRASLDLMIRLLELEQDASSAKLLN
EKDMNKIKEKIRRLCETVHNKHLDLENITTGHLAMETLLSLTSKRAGDWFKEELRLLGGLDHIVDKVKEC
VDHLSRDDEDEEKLVASLWGAERCLRVLESVTVHNPENQSYLIAYKDSQLIISSAKALQHCEDLIQQYNR
AENSICVADSNPLPYQNVTNHVGKAVEDCMRAIIGVLLNLTNDNEWGSTKTGEQEGLIGTAMNCVLQVPK
YLPQEQRFDIRVLGLGLLINLVEYSARNRHCLVNMQTSCSFDSSFSSGEGDHSLRLAGQVHAVQALVQLF
LERERAAQLAESKTDELIKDAPTTQHDKSGEWQETSGEIQWVSTEKTDGAEEKQKKEEEDEELDLNKALQ
HAGKHMEDCIVASYTALLLGCLCQESPINVTTVREYLPEGDFSIMTEMLKKFLSFMNLTCAVGTTGQKSI
SRVIEYLEHC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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