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Report for CCDS36935.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36935.1 Public Mus musculus 14 Sdr39u1 23 108 98 CCDS HistoryNCBI Gene:654795Re-query CCDS DB by CCDS ID:36935.1Re-query CCDS DB by GeneID:654795See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36935.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000111325.4 ENSMUSP00000106957.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111325.4Link to Ensembl Protein Viewer:ENSMUSP00000106957.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000111325Re-query CCDS DB by Protein ID:ENSMUSP00000106957
Original member Current member NCBI NM_001082975.1 NP_001076444.1 Accepted alive Link to Nucleotide Sequence:NM_001082975.1Link to Protein Sequence:NP_001076444.1Re-query CCDS DB by Nucleotide ID:NM_001082975Re-query CCDS DB by Protein ID:NP_001076444Link to BLAST:NP_001076444.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001076444.1 293 Q5M8N4 293 100% 0 0

Chromosomal Locations for CCDS 36935.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 55897603 55898012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55898243 55898386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55899184 55899305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55899647 55899729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55899814 55899920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55900190 55900205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (882 nt):
ATGCGGGTGCTTGTAGGTGGCGGGACGGGATTCATTGGGACAGCCGTAACCCAGCTGCTGAGAGGCAGGG
GCCACGAAGTTAAATTGGTCTCCAGACAGCCTGGCCCGGGTCGAATCACGTGGAGTGAACTCAGTGAGTC
GGGGCTGCCCCTCTGCGATGTTGTCATCAACCTGGCTGGAGAGAATATCCTCAACCCTCTGCGAAGATGG
AATGAAACCTTCCAAAAAGAGGTTCTTACGAGCCGCTTGGATACTACCCACTTGCTAGCCAAAGCCATCA
CCGAAACTGCGCACCCACCTCAGGCTTGGATTCTAGTCACAGGTGTAGCTTACTACCAGCCAAGCCTGAC
TAAGGAGTATGATGAAGACAGCCCAGGAGGGAATTTTGACTTTTTCTCCAACCTGGTAACCAAATGGGAA
GCAGCAGCCAGGCTTCCTGGAGAGTCTACACGCCAGGTCGTGGTACGTTCAGGGGTTGTGCTGGGCCGTG
GAGGTGGCGCCATCAGTCACATGCTTCTGCCCTTCCGCCTGGGCCTAGGAGGCCCCATCGGTTCAGGTCG
CCAATTCTTCCCCTGGATACACATTGGTGACCTGGCAGGAATTCTGAACTATGCCCTTGAAGCAAACCAC
GTCCAAGGAGTCCTGAATGGAGTGGCTCCAGCATCTACAACTACCAATGCTGAGTTTGCCCAGGCCTTGG
GTGCTGCCCTGGGCCGCCCAGCCTTCATACCTGTCCCCAGCACTGTGGTACGAGCGGTCTTTGGAGAACG
TGCCATCATGCTGTTGGAAGGGCAAAAAGTGGTCCCTCGGCGGACACTGGCTACTGGCTACCAGTACTCC
TTCCCAGAGCTGAGGGCTGCCTTGAAGGATGTTGTAGCCTGA

Translation (293 aa):
MRVLVGGGTGFIGTAVTQLLRGRGHEVKLVSRQPGPGRITWSELSESGLPLCDVVINLAGENILNPLRRW
NETFQKEVLTSRLDTTHLLAKAITETAHPPQAWILVTGVAYYQPSLTKEYDEDSPGGNFDFFSNLVTKWE
AAARLPGESTRQVVVRSGVVLGRGGGAISHMLLPFRLGLGGPIGSGRQFFPWIHIGDLAGILNYALEANH
VQGVLNGVAPASTTTNAEFAQALGAALGRPAFIPVPSTVVRAVFGERAIMLLEGQKVVPRRTLATGYQYS
FPELRAALKDVVA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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