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Report for CCDS37147.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37147.1 Public Mus musculus 15 Mrtfa 23 108 98 CCDS HistoryNCBI Gene:223701Re-query CCDS DB by CCDS ID:37147.1Re-query CCDS DB by GeneID:223701See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37147.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109579.8 ENSMUSP00000105207.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109579.8Link to Ensembl Protein Viewer:ENSMUSP00000105207.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000109579Re-query CCDS DB by Protein ID:ENSMUSP00000105207
Original member Current member NCBI NM_153049.3 NP_694629.2 Accepted alive Link to Nucleotide Sequence:NM_153049.3Link to Protein Sequence:NP_694629.2Re-query CCDS DB by Nucleotide ID:NM_153049Re-query CCDS DB by Protein ID:NP_694629Link to BLAST:NP_694629.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_694629.2 964 Q8K4J6-1 964 100% 0 0

Chromosomal Locations for CCDS 37147.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 81013285 81013802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81015349 81015409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81015759 81015911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81016231 81017226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81017951 81018119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81018214 81018479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81020165 81020314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81020753 81020928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81022397 81022558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81023542 81023617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81026662 81026717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81045289 81045354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81104773 81104818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2895 nt):
ATGACTCTGCTGGAGCCTGAGATGCTAATGATGGCTGTGCAGTCAGTGCTGCAGTTGAAGCTCCAGCAGC
GGCGGACCCGGGAGGAACTGGTGAGCCAAGGGATCATGCCGCCTTTGAAAAGCCCCGCTGCATTTCATGA
GCAGAGAAGAAGCCTGGAGCGGGCCAGGACCGAGGACTATTTGAAACGGAAGATCCGTTCCCGGCCCGAG
AGAGCAGAGCTGGTCAGGATGCACATTCTGGAAGAGACCTCGGCTGAGCCTTCGCTCCAGGCCAAGCAGC
TGAAGCTGAAGAGAGCCAGGCTGGCTGATGACCTCAATGAAAAGATTGCACAGAGGCCTGGCCCCATGGA
GCTGGTGGAGAAGAATATCCTGCCTGTGGAGTCCAGCCTGAAGGAGGCTATCATTGTGGGCCAGGTAAAT
TACCCAAAGGTAGCAGACAGTTCCTCCTTCGACGAGGACAGCAGCGATGCCCTGTCTCCTGAGCAGCCTG
CCAGCCATGAGTCCCAGGGTTCAGTGCCATCACCCTTGGAGTCCCGAGTCAGTGATCCACTGCCCAGTGC
CACCTCCATATCACCCACTCAGGTTCTTTCTCAACTCCCAATGGCTCCGGATCCTGGAGAGACGCTTTTT
CTGGCAGAGCAGCCTCCTCTGCCTCCCGCACCTCTGCTGCCCCCAAGCCTAGCCAATGGAAGCATCGTCC
CCACTGCCAAGCCTGCTCCCACACTCATCAAGCAAAGCCAACCCAAGTCTGCCAGCGAGAAATCACAGCG
CAGCAAGAAGGCCAAGGAGCTGAAGCCAAAGGTGAAGAAGCTCAAGTACCACCAGTACATCCCCCCGGAC
CAGAAGCAGGACAAGGGGGCGCCCGCCATGGACTCCTCCTATGCCAAGATCCTGCAGCAGCAGCAGCTCT
TCCTGCAGCTGCAGATCCTCAACCAGCAGCAGCAGCAGCAGCAGCAACAGCACTACAACTACCAGGCCAT
CCTGCCTGCCCCTCCCAAGCCCTCGGCTGAGACTCCTGGAAGCAGTGCCCCTACCCCATCACGCAGCCTC
TCCACCAGTAGCAGCCCCAGCTCAGGCACCCCAGGGCCCAGCGGGCTGGCACGCCAGAGCAGCACCGCAC
TAGCTGCCAAACCAGGAGCCCTGCCAGCCAACCTGGATGACATGAAGGTGGCAGAGCTGAAGCAAGAACT
GAAGTTGCGGTCCCTTCCCGTCTCAGGCACCAAGACAGAGCTGATAGAACGCCTGCGTGCCTACCAAGAC
CAAGTCAGCCCAGCTCCAGGAGCCCCCAAGGCCCCTGCCACCACCTCTGTGCTGTCCAAGGCTGGTGAGG
TAGTGGTCGCCTTCCCTGCGGCCCTGCTAAGCACAGGGTCAGCTCTTGTAACAGCAGGCCTTGCACCAGC
TGAGATGGTGGTGGCCACAGTAACCAGCAATGGCATGGTGAAGTTTGGCAGCACAGGCTCCACACCCCCC
GTGTCTCCCACCCCTTCAGAGCGCTCACTGCTCAGCACGGGTGATGAGAATTCCACACCTGGGGATGCCT
TTGGTGAAATGGTGACATCGCCGCTGACACAGCTCACCCTGCAGGCCTCCCCACTGCAGATCGTGAAGGA
GGAGGGTGCCCGTGCTGCGTCCTGCTGTCTAAGCCCTGGTGCTCGGGCTGAGCTGGAGGGACTGGACAAG
GACCAGATGCTGCAGGAGAAGGACAAGCAGATTGAGGAGCTGACCCGAATGCTCCAACAGAAGCAGCAGC
TGGTTGAGCTGCTGCGGCTACAGCTGGAGCAGCAGAAGCGGGCCCAGCAGCCAGCCCCAGCCAGCAGCCC
TGTGAAGAGGGAAAGTGGTTTCTCCAGTTGCCAGCTGAGCTGCCAGCCCCAGGGCTCTGCCCATGCTTTT
GGCTCTGGCCTAGTGGTTCCCACTACCAACCATGGAGACACTCAGGCCCCAGCGCCAGAGTCCCCACCTG
TGGTGGTGAAGCAGGAAGCTGGGCCACCTGAGCCAGATCTGGCCCCCAGCTCCCAGCTGCTCTTGGGCTC
CCAGGGCACCAGCTTCCTCAAGAGGGTCAGCCCTCCTACCCTGGTCACTGACTCTACAGGGACTCACCTC
ATCCTCACTGTGACCAATAAGAGTGCTGATGGCCCTGGCTTGCCTGCAGGGAGCCCCCAGCAGCCCTTGT
CCCAGCCTGGTTCTCCAGCCCCTGGTCCACCTGCCCAGATGGACCTGGAGCACCCACCTCAGCCTCCGTT
TGCAACCCCCACATCTCTGCTGAAGAAGGAGCCCCCTGGTTATGAAGAGACTGTGACCCAGCAGCCTAAG
CAGCAGGAAAATGGCTCCTCCAGTCAGCACATGGATGATCTGTTTGATATTCTTATTCAGAGTGGAGAGA
TTTCAGCAGATTTCAAAGAGCCACCATCCCTACCAGGCAAGGAAAAGTCACCTCCAGCAGCAGCAGCGTA
TGGGCCTCCATTGACACCACAACCCTCGCCTTTGAGTGAACTCCCCCAAGCTGCTCCTCCACCAGGTTCC
CCCACCCTCCCAGGGCGCCTTGAAGACTTCCTGGAGAGCAGCACAGGGCTGCCCCTGCTGACAAGTGGGC
ACGAGGGACCAGAACCCCTTTCCCTCATTGATGACCTCCACAGCCAGATGCTGAGCAGCTCCGCCATCCT
GGACCACCCCCCATCACCCATGGACACCTCTGAATTGCACTTTGCTCCTGAGCCCAGCAGTGGTATGGGC
CTGGACCTGGCTGTTGGCCACCTGGACAGCATGGACTGGCTGGAGCTGTCGTCTGGTGGCCCTGTGCTCA
GCCTGGCTCCCCTCAGCACTGCAGCCCCCAGCCTCTTCTCGATGGACTTCCTGGATGGACACGACTTGCA
GCTCCACTGGGATTCCTGCTTGTAG

Translation (964 aa):
MTLLEPEMLMMAVQSVLQLKLQQRRTREELVSQGIMPPLKSPAAFHEQRRSLERARTEDYLKRKIRSRPE
RAELVRMHILEETSAEPSLQAKQLKLKRARLADDLNEKIAQRPGPMELVEKNILPVESSLKEAIIVGQVN
YPKVADSSSFDEDSSDALSPEQPASHESQGSVPSPLESRVSDPLPSATSISPTQVLSQLPMAPDPGETLF
LAEQPPLPPAPLLPPSLANGSIVPTAKPAPTLIKQSQPKSASEKSQRSKKAKELKPKVKKLKYHQYIPPD
QKQDKGAPAMDSSYAKILQQQQLFLQLQILNQQQQQQQQQHYNYQAILPAPPKPSAETPGSSAPTPSRSL
STSSSPSSGTPGPSGLARQSSTALAAKPGALPANLDDMKVAELKQELKLRSLPVSGTKTELIERLRAYQD
QVSPAPGAPKAPATTSVLSKAGEVVVAFPAALLSTGSALVTAGLAPAEMVVATVTSNGMVKFGSTGSTPP
VSPTPSERSLLSTGDENSTPGDAFGEMVTSPLTQLTLQASPLQIVKEEGARAASCCLSPGARAELEGLDK
DQMLQEKDKQIEELTRMLQQKQQLVELLRLQLEQQKRAQQPAPASSPVKRESGFSSCQLSCQPQGSAHAF
GSGLVVPTTNHGDTQAPAPESPPVVVKQEAGPPEPDLAPSSQLLLGSQGTSFLKRVSPPTLVTDSTGTHL
ILTVTNKSADGPGLPAGSPQQPLSQPGSPAPGPPAQMDLEHPPQPPFATPTSLLKKEPPGYEETVTQQPK
QQENGSSSQHMDDLFDILIQSGEISADFKEPPSLPGKEKSPPAAAAYGPPLTPQPSPLSELPQAAPPPGS
PTLPGRLEDFLESSTGLPLLTSGHEGPEPLSLIDDLHSQMLSSSAILDHPPSPMDTSELHFAPEPSSGMG
LDLAVGHLDSMDWLELSSGGPVLSLAPLSTAAPSLFSMDFLDGHDLQLHWDSCL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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