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Report for CCDS372.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
372.2 Public Homo sapiens 1 RNF19B 24 110 108 CCDS HistoryNCBI Gene:127544Re-query CCDS DB by CCDS ID:372.2Re-query CCDS DB by GeneID:127544See the combined annotation on chromosome 1 in Sequence Viewer

Public Note for CCDS 372.1
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript and homology data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 372.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000373456.11 ENSP00000362555.7 Accepted alive Link to Ensembl Transcript Viewer:ENST00000373456.11Link to Ensembl Protein Viewer:ENSP00000362555.7Re-query CCDS DB by Nucleotide ID:ENST00000373456Re-query CCDS DB by Protein ID:ENSP00000362555
Original member Current member NCBI NM_153341.4 NP_699172.2 Accepted alive Link to Nucleotide Sequence:NM_153341.4Link to Protein Sequence:NP_699172.2Re-query CCDS DB by Nucleotide ID:NM_153341Re-query CCDS DB by Protein ID:NP_699172Link to BLAST:NP_699172.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_699172.2 732 Q6ZMZ0-1 732 100% 0 0

Chromosomal Locations for CCDS 372.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 32936806 32937259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 32938397 32938528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 32942252 32942459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 32944019 32944159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 32945514 32945628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 32946402 32946564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 32948222 32948366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 32949569 32949774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 32964051 32964685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2199 nt):
ATGGGCTCCGAGAAGGACTCCGAGTCGCCGCGCTCCACATCGCTACATGCGGCCGCACCCGACCCTAAGT
GCCGCAGCGGCGGCCGGCGCCGGCGCCTCACCTTGCACAGCGTCTTCTCTGCCTCGGCCCGCGGCCGCCG
CGCCCGGGCCAAGCCGCAGGCCGAGCCGCCGCCCCCGGCTGCGCAGCCGCCGCCCGCCCCGGCCCCTGCC
GCGGCCCAGGGCCCGCCGCCCGAGGCGCTGCCCGCCGAGCCGGCCGCCGAGGCCGAGGCGGAGGCCGCGG
CGGCGGCGGCGGAGCCTGGGTTCGACGATGAGGAGGCGGCGGAGGGCGGTGGCCCGGGCGCGGAGGAGGT
GGAGTGTCCGCTGTGCCTGGTGCGGCTGCCGCCTGAGCGGGCCCCGCGCCTCCTCAGCTGTCCGCACCGC
TCGTGCCGGGACTGCCTCCGCCACTACCTGCGCCTGGAGATAAGCGAGAGCAGGGTGCCCATCAGCTGCC
CCGAGTGCAGCGAGCGACTCAACCCGCACGACATCCGCTTGCTGCTCGCCGACCCGCCGCTTATGCACAA
GTACGAGGAGTTCATGCTGCGCCGCTACCTAGCCTCGGACCCCGACTGCCGCTGGTGCCCGGCCCCGGAC
TGCGGTTATGCTGTTATTGCCTATGGCTGTGCCAGCTGCCCGAAGCTAACTTGTGAGAGGGAAGGTTGCC
AGACTGAGTTCTGCTACCACTGCAAGCAGATATGGCATCCAAATCAGACATGCGATATGGCCCGTCAACA
GAGGGCCCAGACTTTACGAGTTCGGACCAAACACACTTCAGGTCTCAGTTATGGGCAAGAATCTGGACCA
GCAGATGACATCAAGCCATGCCCACGATGCAGTGCATACATTATCAAGATGAATGATGGAAGCTGTAATC
ACATGACCTGTGCAGTGTGTGGCTGTGAATTCTGTTGGCTTTGTATGAAAGAGATCTCAGACTTGCATTA
CCTCAGCCCCTCTGGCTGTACATTCTGGGGCAAGAAGCCATGGAGCCGTAAGAAGAAAATTCTTTGGCAG
CTGGGCACGTTGATTGGTGCTCCAGTGGGGATTTCTCTCATTGCTGGCATTGCCATTCCTGCCATGGTCA
TTGGCATTCCTGTTTATGTTGGAAGGAAGATTCACAGCAGGTATGAGGGAAGGAAAACCTCCAAACACAA
GAGGAATTTGGCTATCACTGGAGGAGTGACTTTGTCGGTCATTGCATCCCCAGTTATTGCTGCAGTTAGT
GTTGGTATTGGTGTCCCCATTATGCTGGCATATGTTTATGGGGTTGTGCCCATTTCTCTTTGTCGTGGAG
GCGGCTGTGGAGTTAGCACAGCCAACGGAAAAGGAGTGAAAATTGAATTTGATGAAGATGATGGTCCAAT
CACAGTGGCAGATGCCTGGAGAGCCCTCAAGAATCCCAGCATTGGGGAAAGCAGCATTGAAGGCCTGACT
AGTGTATTGAGCACTAGTGGAAGCCCTACAGATGGACTTAGTGTTATGCAAGGTCCTTACAGCGAAACGG
CCAGCTTTGCAGCCCTCTCAGGGGGCACGCTGAGTGGCGGCATTCTCTCCAGTGGCAAGGGAAAATATAG
CAGGTTAGAAGTTCAAGCCGATGTCCAAAAGGAAATTTTCCCCAAAGACACAGCCAGTCTTGGTGCAATT
AGTGACAACGCAAGCACTCGTGCTATGGCCGGTTCCATAATCAGTTCCTACAACCCACAGGACAGAGAAT
GCAACAATATGGAAATCCAAGTGGACATTGAAGCCAAACCAAGCCACTATCAGCTGGTGAGTGGAAGCAG
CACGGAGGACTCGCTCCATGTTCATGCTCAGATGGCAGAGAATGAAGAAGAAGGTAGTGGTGGCGGAGGC
AGTGAAGAGGATCCCCCCTGCAGACACCAAAGCTGTGAACAGAAAGACTGCCTGGCCAGCAAACCTTGGG
ACATCAGCCTGGCCCAGCCTGAAAGCATCCGCAGTGACCTAGAGAGTTCTGATGCACAGTCAGACGATGT
GCCAGACATCACCTCAGATGAGTGTGGCTCCCCCCGCTCCCATACTGCAGCCTGCCCCTCGACCCCCAGA
GCCCAAGGTGCACCGAGCCCAAGTGCCCATATGAACCTCTCTGCCCTAGCCGAGGGACAAACTGTCTTGA
AGCCAGAAGGTGGAGAAGCCAGAGTATGA

Translation (732 aa):
MGSEKDSESPRSTSLHAAAPDPKCRSGGRRRRLTLHSVFSASARGRRARAKPQAEPPPPAAQPPPAPAPA
AAQGPPPEALPAEPAAEAEAEAAAAAAEPGFDDEEAAEGGGPGAEEVECPLCLVRLPPERAPRLLSCPHR
SCRDCLRHYLRLEISESRVPISCPECSERLNPHDIRLLLADPPLMHKYEEFMLRRYLASDPDCRWCPAPD
CGYAVIAYGCASCPKLTCEREGCQTEFCYHCKQIWHPNQTCDMARQQRAQTLRVRTKHTSGLSYGQESGP
ADDIKPCPRCSAYIIKMNDGSCNHMTCAVCGCEFCWLCMKEISDLHYLSPSGCTFWGKKPWSRKKKILWQ
LGTLIGAPVGISLIAGIAIPAMVIGIPVYVGRKIHSRYEGRKTSKHKRNLAITGGVTLSVIASPVIAAVS
VGIGVPIMLAYVYGVVPISLCRGGGCGVSTANGKGVKIEFDEDDGPITVADAWRALKNPSIGESSIEGLT
SVLSTSGSPTDGLSVMQGPYSETASFAALSGGTLSGGILSSGKGKYSRLEVQADVQKEIFPKDTASLGAI
SDNASTRAMAGSIISSYNPQDRECNNMEIQVDIEAKPSHYQLVSGSSTEDSLHVHAQMAENEEEGSGGGG
SEEDPPCRHQSCEQKDCLASKPWDISLAQPESIRSDLESSDAQSDDVPDITSDECGSPRSHTAACPSTPR
AQGAPSPSAHMNLSALAEGQTVLKPEGGEARV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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