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Report for CCDS37306.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37306.1 Public Mus musculus 16 Ccdc50 23 108 98 CCDS HistoryNCBI Gene:67501Re-query CCDS DB by CCDS ID:37306.1Re-query CCDS DB by GeneID:67501See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37306.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000096127.10 ENSMUSP00000093841.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000096127.10Link to Ensembl Protein Viewer:ENSMUSP00000093841.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000096127Re-query CCDS DB by Protein ID:ENSMUSP00000093841
Original member Current member NCBI NM_001025615.3 NP_001020786.1 Accepted alive Link to Nucleotide Sequence:NM_001025615.3Link to Protein Sequence:NP_001020786.1Re-query CCDS DB by Nucleotide ID:NM_001025615Re-query CCDS DB by Protein ID:NP_001020786Link to BLAST:NP_001020786.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001020786.1 290 Q810U5-2 290 100% 0 0

Chromosomal Locations for CCDS 37306.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 27389089 27389137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 27405647 27405709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 27406651 27406777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 27409324 27409414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 27417248 27417365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 27435562 27435677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 27436498 27436602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 27438301 27438377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 27444544 27444650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 27446248 27446267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (873 nt):
ATGGCCGACGTGAGTGTAGATCAGTCCAAGTTGCCGGGCGTGAAGGAAGTGTGTAGAGATTTTGCCGTCC
TGGAGGACCACACCCTGGCCCATAGCCTGCAGGAACAAGAGATTGAGCATCATTTGGCATCCAACATTCA
GCGGAACCGTCTGGTACAACATGATCTGCAGGTTGCTAAGCAGCTCCAAGAGGAAGACCTCAAAGCCCAA
GCTCAGCTCCAGAAGCGCTACAAAGCCCTTGAACAACATGATTGTGAAATTGCTCAGGAAATCCAGGAGA
AGCTAACCATTGAGGCTGAGAGACGACGCATTCAGGAAAAGAAGGATGAGGACATAGCACGTCTTTTGCA
AGAGAAGGAGCTACAGGAGGAGAAAAGGAGGAAGAAACACACTCCAGAGTTTTCTGGGGGCAGTGTTTTT
GGAGATAACTACTATCATGAGGATGGAGGAATGAAACCAAGAGGAATAAAAGAAGCTGTCTCTACTCCAG
CACGAGCAAGCCACAGGGACCAGGAGTGGTATGATGCTGAAATTGCCAGGAAATTGCAAGAAGAAGAACT
TTTGGAAATTGCTCGACTTCTAATGGCTGAAGAAAAAAAAGCTTACAAGAAAGCCAAAGAGCGAGAAAAG
TCATCTTTGGACAAAAGGAAACATGACCCTGAATGCAAGTTAAAAGCAAAGTCAGCCCACTCAAAGTCAA
AAGAGGGTGATGAAGCACACCGCTCCAAGATTGACAGGCCATCAAGACCACCACCACCTACCATGATGGG
CCTTGAGGACACAGATCCCACCCATTTTACAAACCAGCACAGTACAACATGGCATCTTCCAAAGTCAGAG
TCCTCACAGAAAGGCTTCCATAACAAGCAGTAA

Translation (290 aa):
MADVSVDQSKLPGVKEVCRDFAVLEDHTLAHSLQEQEIEHHLASNIQRNRLVQHDLQVAKQLQEEDLKAQ
AQLQKRYKALEQHDCEIAQEIQEKLTIEAERRRIQEKKDEDIARLLQEKELQEEKRRKKHTPEFSGGSVF
GDNYYHEDGGMKPRGIKEAVSTPARASHRDQEWYDAEIARKLQEEELLEIARLLMAEEKKAYKKAKEREK
SSLDKRKHDPECKLKAKSAHSKSKEGDEAHRSKIDRPSRPPPPTMMGLEDTDPTHFTNQHSTTWHLPKSE
SSQKGFHNKQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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