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Report for CCDS37354.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37354.1 Public Mus musculus 16 Bbx 23 108 98 CCDS HistoryNCBI Gene:70508Re-query CCDS DB by CCDS ID:37354.1Re-query CCDS DB by GeneID:70508See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37354.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114488.7 ENSMUSP00000110132.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114488.7Link to Ensembl Protein Viewer:ENSMUSP00000110132.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114488Re-query CCDS DB by Protein ID:ENSMUSP00000110132
Original member Current member EBI ENSMUST00000138166.7 ENSMUSP00000119238.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000138166.7Link to Ensembl Protein Viewer:ENSMUSP00000119238.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000138166Re-query CCDS DB by Protein ID:ENSMUSP00000119238
Original member Current member NCBI NM_027444.3 NP_081720.2 Accepted alive Link to Nucleotide Sequence:NM_027444.3Link to Protein Sequence:NP_081720.2Re-query CCDS DB by Nucleotide ID:NM_027444Re-query CCDS DB by Protein ID:NP_081720Link to BLAST:NP_081720.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081720.2 907 Q8VBW5-1 907 100% 0 0

Chromosomal Locations for CCDS 37354.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 50197559 50197646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 50200408 50200591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 50202378 50202575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 50209085 50209144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 50220445 50220593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 50223250 50223385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 50224288 50225293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 50240854 50240934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 50247782 50247856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 50251314 50251394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 50262416 50262483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 50266177 50266369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 50274547 50274789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 50280369 50280530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2724 nt):
ATGAAAGGCAGTAATAGAAATAAAGACCATTCAACAGAAGGAGAAGGGGACGGAAAACGACCAAAACGGA
AGTGTCTTCAGTGGCATCCGTTGCTAGCTAAGAAACTTCTGGACTTTTCAGAGGAGGAGGAGGAAGACGA
GGAAGAGGAAGATATTGATAAAGTTCAACTTCTTGAGGCGGATGGCCTAGAGCAAGATGTTGCTGAGACT
GAAGATGATGAGTCACCTGAGCAGCGAGCCCGGAGACCAATGAATGCATTTCTTTTATTTTGCAAGCGCC
ACCGCTCCCTTGTCCGACAGGAACACCCAAGGCTTGATAACCGAGGTGCTACCAAGATACTAGCTGATTG
GTGGGCTGTTCTTGATCCTAAGGAAAAGCAGAAATATACAGACATGGCCAAGGAGTATAAAGATGCATTT
ATGAAAGCAAATCCTGGCTACAGATGGTGCCCTACCACAAACAAGCCTGTGAAATCGCCAACACCCACTG
TCAATCCACGGAAGAAACTTTGGGCCTTCCCACCTGACTCTTCAAGAGACTTGCCAACCCCCAAGAAGGC
AAAGACAGAAGTTCCTCAGCTCAACTTTGGAATGGCAGATCCTACTCAGATGGGGGGCCTGAGCATGTTG
CTGCTAGCTGGAGAGCACGCTCTTGGGACACCAGAGGCATCCTCTGGGACTTGCAGGCCTGATATTTCAG
AATCACCTGAGTTGCGTCAGAAGTCACCATTGTTTCAGTTTGCCGAGATATCTTCAAGGACATCGCACCC
CGATGCGCCTTCAAAACAGTGTCAAGCGTCAGCCTTGTTTCAGTTTGCAGAGATCTCTTCAAGCACTTCG
CAGTTGGGTGGCACTGAGCCTGTGAAACGCTGTGGAAATTCTGCACTCTTTCAACTGGCAGAGATGTGTC
TGGCATCAGAGGGGGTGAAAATGGAAGACACAAAACTAATAAAATCAAAAGAGTCAGATGGAGGAAGAAT
TGAGGAAATAGAAAAGGGGAAGGAAGAGAGAGGCACAGAAGTGGAGAAAACCACTGAAACTTCGTTCCAG
AAGGAAGCAGAATTTGGGAAGTCAGCTAAGGGCAACGTGAGAGAGTCTAAGGACTTAAGAGACATCGAAC
AGCTACAGATGGATAATGTCATGGCTATCAAAGTGGAAGACCCCAAAGAAATTAGGAAGGAGCCAGAGGA
TGATCAGAAATACAGTCACTTCCCTGATTTTTCTTACTCTGCCAGTAGCAAGATAATAATTAGTGGTGTC
CCCAGTAGAAAGGACCACATGTGCCATCCTCACGGAATTATGATCATTGAGGACCCAACCACGCTAAACA
AACCAGAGAAGATAAAGAAGAAAAAGAAGAAAAACAAACTGGATCGACACGGAAATGACAAATCCACACC
CAAGAAGACGTGCAAGAAGAGGCAGTCTTCAGAATCTGACATCGAGAGTGTCATGTACACCATCGAAGCT
GTGGCAAAAGGAGACTGGGGTGTTGACAAACTCGGAGAAACCCCAAGAAAGAAAGTCCGCCCCTCCTCAA
GTGGCAAGGGAGGCATTTTGGATGCCAAGCCACCAAAGAAAAAAGTGAAATCCAAGGAGAAGAAAGTTTC
CAAGGAGAAGTGCTCAGACATCACCAAAGAGTCTCGACCTCCAGATTTCCTTAGCATTTCTGCCAGCAAG
AGTGTTCCTGGGGAGGTGCCAGAGGGCATAAAAGCAGAACCCTTGACCCCTACCGAGGATGCACTGCCAC
CTAGCCTACCAGGACAGGCTAAGCCTGAGGATAGTGATTGTCACAGAAAAACGGAGACCTGTGGCTCCAG
GAAATCTGAGAGGTCTTGCAAAGGTGCTCTTTATAAAACCCTGGTGTCCGAGGGCATGCTCACCTCTCTC
CGAGCTAATGTTGACAGAGGGAAACGAAGCTCAGGAAAAGGAAACTCCTCTGATCATGAAGGGTGTTGGA
GTGAAGAGAGCTGGACATTTAATCAGAGTGGGACCAGTGGGAGCAAGAAGTTTAAGAAGAAACTAAGGGA
AGACTCCTTCCTTGGTTCTGCGAAGCTGGATGAAGAATTTGAAAAGAAATTCAACAGCCTCCCTCAATAT
AGTCCTATTACATTTGACCGGAAATGCGTATCTACTCCAAGAAAAAAGAAGAAGACTGGAAACATGTCCT
CAGAATCGACTAAAACCAGCAAAGGAAGTGGGGATAAATGGTCACACAAGCAATTTTTCTTGGATGCCAT
TCACCCTACAGAAGCCATATTTTCCGAAGATAAAAGCACCACAGAGCCTGCTTTTAAGGTTAAAAATGCC
CTATCCATTCCCAACACTCCAGAGCCAACAACAATGCAAGAACCTTTGGTTGGCAGCCAAAAGAGAAAAG
CAAGGAAAACCAAGATCACACACCTTGTCAGGACTGCAGATGGCCGAGTATCACCAGCAGGAGGTACTTT
GGATGACAAACCAAAGGAGCAACTGCAGAGGAGTCTCCCCAAAGTCCCTGGGACATACTGCGGTGACAAT
TGCTCACACAGCACGGTTGAGGAGCCACGGAGCAGCACTCCAGACATGCCTGCTGTGTCTGCGTTCTTCA
GCCTCGCTGCACTGGCTGAGGTTGCGGCCATGGAGAATGTGCACAGAGGCCAGAGATCAACTCCGCTCAC
CCATGATGGACAGCCAAAAGAAATGCCGCAGGCTCCTGTACTTATTTCTTGTGCTGACCAGTGA

Translation (907 aa):
MKGSNRNKDHSTEGEGDGKRPKRKCLQWHPLLAKKLLDFSEEEEEDEEEEDIDKVQLLEADGLEQDVAET
EDDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYTDMAKEYKDAF
MKANPGYRWCPTTNKPVKSPTPTVNPRKKLWAFPPDSSRDLPTPKKAKTEVPQLNFGMADPTQMGGLSML
LLAGEHALGTPEASSGTCRPDISESPELRQKSPLFQFAEISSRTSHPDAPSKQCQASALFQFAEISSSTS
QLGGTEPVKRCGNSALFQLAEMCLASEGVKMEDTKLIKSKESDGGRIEEIEKGKEERGTEVEKTTETSFQ
KEAEFGKSAKGNVRESKDLRDIEQLQMDNVMAIKVEDPKEIRKEPEDDQKYSHFPDFSYSASSKIIISGV
PSRKDHMCHPHGIMIIEDPTTLNKPEKIKKKKKKNKLDRHGNDKSTPKKTCKKRQSSESDIESVMYTIEA
VAKGDWGVDKLGETPRKKVRPSSSGKGGILDAKPPKKKVKSKEKKVSKEKCSDITKESRPPDFLSISASK
SVPGEVPEGIKAEPLTPTEDALPPSLPGQAKPEDSDCHRKTETCGSRKSERSCKGALYKTLVSEGMLTSL
RANVDRGKRSSGKGNSSDHEGCWSEESWTFNQSGTSGSKKFKKKLREDSFLGSAKLDEEFEKKFNSLPQY
SPITFDRKCVSTPRKKKKTGNMSSESTKTSKGSGDKWSHKQFFLDAIHPTEAIFSEDKSTTEPAFKVKNA
LSIPNTPEPTTMQEPLVGSQKRKARKTKITHLVRTADGRVSPAGGTLDDKPKEQLQRSLPKVPGTYCGDN
CSHSTVEEPRSSTPDMPAVSAFFSLAALAEVAAMENVHRGQRSTPLTHDGQPKEMPQAPVLISCADQ


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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