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Report for CCDS3743.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3743.1 Public Homo sapiens 4 NOCT 24 110 108 CCDS HistoryNCBI Gene:25819Re-query CCDS DB by CCDS ID:3743.1Re-query CCDS DB by GeneID:25819See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3743.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000280614.4 ENSP00000280614.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000280614.4Link to Ensembl Protein Viewer:ENSP00000280614.2Re-query CCDS DB by Nucleotide ID:ENST00000280614Re-query CCDS DB by Protein ID:ENSP00000280614
Original member Current member NCBI NM_012118.4 NP_036250.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_012118.4Link to Protein Sequence:NP_036250.2Re-query CCDS DB by Nucleotide ID:NM_012118Re-query CCDS DB by Protein ID:NP_036250Link to BLAST:NP_036250.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036250.2 431 Q9UK39 431 100% 0 0

Chromosomal Locations for CCDS 3743.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 139015982 139016171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139043074 139043343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139044639 139045474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1296 nt):
ATGTTTCATAGTCCGCGGCGGCTCTGCTCGGCCCTGCTGCAGAGGGACGCGCCCGGCCTGCGCCGCCTGC
CCGCCCCAGGGCTGCGCCGCCCGTTGTCCCCGCCGGCTGCTGTTCCCAGGCCCGCATCCCCCCGGCTGCT
GGCGGCGGCCTCGGCGGCCTCGGGCGCCGCGAGGTCGTGTTCCCGAACAGTGTGTTCCATGGGAACCGGT
ACAAGCAGACTCTATAGTGCTCTCGCCAAGACACTGAACAGCAGCGCTGCCTCCCAGCACCCAGAGTATT
TGGTGTCACCTGACCCAGAGCATCTGGAGCCCATTGATCCTAAAGAGCTTCTTGAGGAATGCAGGGCCGT
CCTGCACACCCGACCTCCCCGGTTCCAGAGGGATTTTGTGGATCTGAGGACAGATTGCCCTAGTACCCAC
CCACCTATCAGGGTTATGCAATGGAACATCCTCGCCCAAGCTCTTGGAGAAGGCAAAGACAACTTTGTAC
AGTGCCCTGTTGAAGCACTCAAATGGGAAGAAAGGAAATGTCTCATCCTGGAAGAAATCCTGGCCTACCA
GCCTGATATATTGTGCCTCCAAGAGGTGGACCACTATTTTGACACCTTCCAGCCACTCCTCAGTAGACTA
GGCTATCAAGGCACGTTTTTCCCCAAACCCTGGTCACCTTGTCTAGATGTAGAACACAACAATGGACCAG
ATGGTTGTGCCTTATTTTTTCTTCAAAACCGATTCAAGCTAGTCAACAGTGCCAATATTAGGCTGACAGC
CATGACATTGAAAACCAACCAGGTGGCCATTGCACAGACCCTGGAGTGCAAGGAGTCAGGCCGACAGTTC
TGCATCGCTGTTACCCATCTAAAAGCACGCACTGGCTGGGAGCGGTTTCGATCAGCTCAAGGCTGTGACC
TCCTTCAGAACCTGCAAAACATCACCCAAGGAGCCAAGATTCCCCTTATTGTGTGTGGGGACTTCAATGC
AGAGCCAACAGAAGAGGTCTACAAACACTTTGCTTCCTCCAGCCTCAACCTGAACAGCGCCTACAAGCTG
CTGAGTGCTGATGGGCAGTCAGAACCCCCATACACTACCTGGAAGATCCGGACCTCAGGGGAGTGCAGGC
ACACCCTGGATTACATCTGGTATTCTAAACATGCTCTAAATGTAAGGTCAGCTCTCGATCTGCTCACTGA
AGAACAGATTGGACCCAACAGGTTACCTTCCTTCAATTATCCTTCAGACCACCTGTCTCTAGTGTGTGAC
TTCAGCTTTACTGAGGAATCTGATGGACTTTCATAA

Translation (431 aa):
MFHSPRRLCSALLQRDAPGLRRLPAPGLRRPLSPPAAVPRPASPRLLAAASAASGAARSCSRTVCSMGTG
TSRLYSALAKTLNSSAASQHPEYLVSPDPEHLEPIDPKELLEECRAVLHTRPPRFQRDFVDLRTDCPSTH
PPIRVMQWNILAQALGEGKDNFVQCPVEALKWEERKCLILEEILAYQPDILCLQEVDHYFDTFQPLLSRL
GYQGTFFPKPWSPCLDVEHNNGPDGCALFFLQNRFKLVNSANIRLTAMTLKTNQVAIAQTLECKESGRQF
CIAVTHLKARTGWERFRSAQGCDLLQNLQNITQGAKIPLIVCGDFNAEPTEEVYKHFASSSLNLNSAYKL
LSADGQSEPPYTTWKIRTSGECRHTLDYIWYSKHALNVRSALDLLTEEQIGPNRLPSFNYPSDHLSLVCD
FSFTEESDGLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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