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Report for CCDS37604.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37604.1 Public Mus musculus 17 Mdc1 23 108 98 CCDS HistoryNCBI Gene:240087Re-query CCDS DB by CCDS ID:37604.1Re-query CCDS DB by GeneID:240087See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37604.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000082337.12 ENSMUSP00000080949.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000082337.12Link to Ensembl Protein Viewer:ENSMUSP00000080949.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000082337Re-query CCDS DB by Protein ID:ENSMUSP00000080949
Original member Current member NCBI NM_001010833.2 NP_001010833.2 Accepted alive Link to Nucleotide Sequence:NM_001010833.2Link to Protein Sequence:NP_001010833.2Re-query CCDS DB by Nucleotide ID:NM_001010833Re-query CCDS DB by Protein ID:NP_001010833Link to BLAST:NP_001010833.2

Chromosomal Locations for CCDS 37604.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 35844435 35844570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35845839 35846219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35846302 35846377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35847323 35848665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35848789 35848857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35849007 35849099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35850295 35851005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35851113 35851156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35852415 35853888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35854021 35854112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35854203 35854322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35854417 35854599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35854856 35854981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35855100 35855210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35857463 35857630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5127 nt):
ATGGAAAGCACCCAGGTGATTGACTGGGATGCTGAAGAAGAGGAAGAGACAGAACTATCCAGTGGCTCCT
TGGGGTATAGTGTGGAGCCTATAGGGCAGCTACGTCTCTTCAGTGGAACTCATGGACCAGAAAGAGATTT
CCCCCTCTACCTTGGCAAGAATGTAGTTGGTCGAAGCCCTGACTGCTCTGTGGCCCTGCCTTTTCCATCC
ATCTCCAAACAGCATGCAGTAATTGAAATCTCAGCTTGGAACAAAGCCCCTATCCTCCAGGATTGTGGGA
GCCTCAATGGCACTCAAATCGTAAAGCCTCCTAGGGTCCTACCTCCTGGAGTGAGCCATCGTCTGAGGGA
CCAGGAATTAATTCTGTTTGCAGATTTTCCCTGCCAGTACCATCGCCTGGATGTCCCACCACCCTTGGTC
CCTCGGAGTCTTCTAACTATAGAGAAAACCCCCAGAATACGGATAGAATCCCAAAATTCCAGAGTTTTGT
TGGCTGCCGATTCAGAGGAAGAAGGGGATTTTCCTTCTGGAAGGTGTGTGGCGAATGGACAAAGGAATAC
AGCATCCCCTTCAGCAACAGTAGTTCCAGAAAGTGATGAAGAGGTCTCTTCTCCGGCCCCAAGTGTCCCC
GGGCCATCTTCACCCTTTGGTTTGGGCAGTGACACTGATGAAGAACAAGGTCAGCAACCAGGAGTAGAGG
AGTCCTCTTTAGCTGACAGCAGTGGTGCTGCAGGGGAAGCTGAGCAGCCTGAAGCTAACGGAACGACAGC
TGGCATACAGGCTCAGCCTACTGAGCACAAATTGAAGGACACAAAAGTCAAGAAGGAGGCAGGCAGGGCA
GGGGTCTCAGATGGGTCAGTTCTGGAGAGGAGCCCCACTCTTGGAGAGGACAGTGACACAGAAGTGGACG
AAGATCACAAACCTGGGTTTGCGGACAGTGAGACAGATGTGGAAGAAGAGAGGATCCCTGTGACCCCCCC
TGTAGCCCCTGTGAAGAAAAACCAAGTGCTACTTGCAGTTGGTATAGGAGATCCTGAAGCACCTGGTGTG
GCACATCTGCAGGACTGCCTAGCTGGTAGTGGCACAGATGTGGAGGACAAGACTGCACTGGATGTCCCTC
TAGAGAGAAACCACACACCCATGGTGATCAACAGTGATACAGATGAGGAGGAGGAGGAGGAGGAGGAGGA
GGTCTCAGCAGCACTCACTTTGGCCCATCTGAAAGAGAGAGGAATTGGTTTGTGGAGTAGAGACCCAGGC
GCAGAAGAGGTCAAGTCCCAACCACAGGTCCTTGTAGAACAAAGCCAGAGTGCCTCTGGGAGAGACAGTG
ACACGGATGTGGAGGAGGAATCCTCAGGGCGAAAGAGAGAGATTATCCCAGACAGTCCCATGGATGTAGA
TGAGGCTCTTACTGTCACACAGCCAGAGAGCCAGCCTCCCCGTAGGCCCAATGATGCAGATGAGTACATG
GATATGAGCTCCCCTGGCAGCCATCTAGTGGTAAATCAGGCCTCCTTTGCTGTGGTAGGCAAGACCAGAG
CACAAGTGGAGGAGGAAGTCCCAGGGCCATCTGTTATCCTGGGGGAGAAGCACCAGGTGCCTCTAGAGGG
AGCCCAGCCTCCTGAGGAAGCCTGGGAAACAGCTGTTCAGGAAGGCTCATCCTCACCAGAGGCAGCAGCC
TCTGTAAGGCCTAGCCAGCAGCCAGTAGCAGAAGATGCTGGGACAGAGTGTGCTACAGCTGTTTCTGAGC
AGGAAAGTACTCTTGAGGTGAGGTCCCAAAGCGGGTCACCTGCAGCACCAGTGGAGCAAGTGGTGATACA
TACAGATACTTCAGGGGATCCCACCCTGCCACAGAGAGAGGGAGCCCAAACCCCCACAGGAAGGGAGAGA
GAAGCACATGTGGGCAGGACCAAGAGTGCCAAAGAGTGCTGTGATGCAGAACCTGAAGATCTGTGCCTTC
CAGCTACCCAGTGCTTTGTGGAAGGGGAGAGCCAGCACCCAGAAGCTGTCCAGAGTTTGGAAAATGAGCC
TACCCAACTCTTCCCATGTACTCTTCCACAAGAGCCAGGACCTTCCCATCTCAGCCTTCAGACTCCAGGT
GCAGATACCTTGGATGTGCCTTGGGAAGTCTTGGCTACACAGCCGTTCTGTCTAAGAGAACAGTCAGAGA
CTTCTGAGCTTCATGAAGCTCATGGATCTCAACCATCTCTGCCTAGGGAACCACCAGGACACCAACATCT
GGTTCATACCAGCCCAGTTCACACAGAGCTGTTGAGAATTGAAGGCAGAGAGATACAGACTGTGGAGAAA
GCCATGGGTATACCAAAGGAAATGGCAGACAGGATGACCCCTGAGAGAGAGCCATTGGAGAGGGAAATCA
GGGGAAGAACAGAAAACAGTGAGAGAGATGTGATAGGAGAAGAACTAATTCAGGGGACAAAGGACAGAGA
GCCAAAGAAGGTGTTAGCTAGAGACAGTCAGAGAAAAGAGGCTGACAAGGATCTTGAAGGGAATAGGGAG
AGTTTGGAGGTAGAAATAGAGATGTCCAAAGACTCACAGAAGAGAGAGAGAAAAGTAGAGAAACCAGAAC
CAAAGAGAGAATGGGAGCCAGCTGATTTAGAAGTGACTCCAGATAGAGGGGTGACAGAGGAAGGGAGCCA
TGATCAGAAAGGGCAAATTGCTAGTCTAACACTAAAGCCTGGAGTTGGGGTGAAGGACCTTGAGGGACTT
GCATCAGCCCCAATAATCACAGGGAGCCAGGCAGATGGAGGAAAGGGAGACCCTTTGAGCCCTGGGAGGC
AGCAGAGAGGCCGCTTGAGTTGCCAGACGACACCTGCTGGAAAGGCTTCCAGGGGTGATCCAGAGCCCCC
AGACCACTGCCTGTTTTCTTCAGTGCCTGAAGCTTCAACTCAGAGTCTCCTCACCTCTCAGAGCCAAAAG
CAGTCTACACCTCAGCCTCTGTTTTCGACCTCTTCTTCTGAGATACCCCTTCCTGAGAGTCTTCACACAA
AGCCTAATGTCAGGCCACGGCGGTCCTCCAGGATGACCCCCTCCCCGCATTCCTCTGCTGCCCTTAAGCC
AAATACTACCTGCCCCACAAACCAGCCTGCTGCCTCTAGACCAACATCCCGACCCACTCGGGGCAGGGCA
AATAGGTCCTCTACCAGGACCCCAGAACTGATTGTCCCTGTAGACCCTGAACTCCAGCCTTCCACCTCCA
CAGAACAGCCTGTCATCCCAAAACTTACGTCCCAGGTCACTGAGGGCAGGGTACAGATGCCTGAACCACT
TCTCACAGGTCCCGAGATCCAGTCTCCCACCTCCACAGAACAGTCTGTCACCCCAGACCGCAAACCTCGG
GCCACTCGGGGCAGGCCAAGTAAATCTCCCAACAAGACCCCAGAACCACTTATTTCTACTGGCCCTGAAC
TCCAACCTCCCACCTCCATAGAACAACCTGTCATACCTAAACCCACTTCTCGGGTCACTCGGGGCAGACC
ACGTAAGTCTTCTGTCAGGACCCCAGAATCAGTTGTCTCCACTGGCCCTGAACTTCAGCCTCTCACCTCT
ATAGAACAGCCTGTTATCCCTGAACCTAGGGCCACTCGAGGTAGACCAAGTAAGTCTTCTATCAAGACCC
CAGAATCAGTTGTCCCCACTGGTCCTGAGCTGCAGCCTCTTACCTCTGCAAAACAGCCTGTCACCCCTAA
CCTCACATCTCGGGCCTCTCGGGGTAGATCAAGTAAGTCTATCAGGACCCCGGAACCAGTTGTCCAAACT
GGCCCTGAATTCCATCCATCCACCTCCACAGAACAGCCTGATACCCGTGAGCCCTCATCTCAGGCTAGGA
CACGTAGGTCTGCTGTCAAGACTCCTGAAGCGAGTGTCCCCACAACCCCTGAACTCCAGCCTTTCACTTC
TAAAAAACAGCCTGCCCCTAAGCCTACAGCTCTGGTCACTCAGGGAAGGACATATAAACCCTCCACTGAA
GATTGTGAATCAGTTGGGCCAGTGGCCCCTGATTTTGAGCCTTCCACCTCTACAGACCATCTTGTCACCC
CTAAGGTTACAGATCAGAGCTTAACACTACAGTCTTCACCCCTAAGTGCTTCCCCAGTTTCCAGTACCCC
TGATCTCAAGCCTCCTGTCCCCATAGCCCAGCCTGTTACCCCAGAGCCCATTCCACAAGCCAATCACCAA
AGGAAACGAAGGGCTGCTGGGAAGCAGGGTTCCCGCACAGTCCCTCTGGGTCATAAGTCTTACTCTGCCC
TCTCTGAACCTGAGCCCCAATCTTCAGCCAGCCAAAGCTCAGGAGCATCAGAAGCAGACTCACCCCGTCA
AAAACGTCCCAGAAGACAAGCCTCCCAGAAAACTGTAGTCATCAAGGAAGAACCTGTAGAAACAGAAGTG
AAGGAAGAGCCTCAAGAGACTGCAATTCCAACACCAGAAAAGAGAAAGAGGGACCATGCAGAAGAAGTGA
CCCAGGGAAAACCAACTCGAAGCCGGCGAACTAAACCTAACCAAGAAACAGCCCCCAAGGTACTGTTCAC
AGGAGTCATGGATTCTCGTGGCGAGCGTGCAGTGCTGGCTCTGGGAGGCAGTCTGGCCAGCTCAGTAAAT
GAGGCCTCCCACTTAGTTACTGATCGCATCCGCAGGACAGTCAAGTTCTTGTGTGCCCTGGGGAAGGGAA
TTCCCATCCTGTCCCTGAACTGGCTGTACCAGTCCCGAAAGGCTGGTTGCTTCTTGCCGCCTGATGACTA
CTTAGTGACTGATCCTGAGCAAGAGAAGAACTTTAGCTTCAGCCTTCGGGATTCCCTGTGCCGGGCTCGG
GAACGAAGACTGCTGGAGGACTATGAGATTCATGTGACCCCTGGCGTGCAGCCACCCCCCCCTCAGATGG
GCGAGATCATCAGTTGCTGTGGAGGCACTTTCCTGCCCAGCATGCCTCACTCCTATAAGCTTCACCGAGT
CATCATAACTTGCACTGAAGACCTACCACGCTGTGCTATTCCATCCCGCCTGGGGCTACCCCTCCTCTCT
CCTGAGTTCCTCCTGACTGGAGTGCTGAAGCAGGAAGCCACACCAGAGGCCTTTGTTCTCTCCAATTTGG
AAATGTCATCTACCTAA

Translation (1708 aa):
MESTQVIDWDAEEEEETELSSGSLGYSVEPIGQLRLFSGTHGPERDFPLYLGKNVVGRSPDCSVALPFPS
ISKQHAVIEISAWNKAPILQDCGSLNGTQIVKPPRVLPPGVSHRLRDQELILFADFPCQYHRLDVPPPLV
PRSLLTIEKTPRIRIESQNSRVLLAADSEEEGDFPSGRCVANGQRNTASPSATVVPESDEEVSSPAPSVP
GPSSPFGLGSDTDEEQGQQPGVEESSLADSSGAAGEAEQPEANGTTAGIQAQPTEHKLKDTKVKKEAGRA
GVSDGSVLERSPTLGEDSDTEVDEDHKPGFADSETDVEEERIPVTPPVAPVKKNQVLLAVGIGDPEAPGV
AHLQDCLAGSGTDVEDKTALDVPLERNHTPMVINSDTDEEEEEEEEEVSAALTLAHLKERGIGLWSRDPG
AEEVKSQPQVLVEQSQSASGRDSDTDVEEESSGRKREIIPDSPMDVDEALTVTQPESQPPRRPNDADEYM
DMSSPGSHLVVNQASFAVVGKTRAQVEEEVPGPSVILGEKHQVPLEGAQPPEEAWETAVQEGSSSPEAAA
SVRPSQQPVAEDAGTECATAVSEQESTLEVRSQSGSPAAPVEQVVIHTDTSGDPTLPQREGAQTPTGRER
EAHVGRTKSAKECCDAEPEDLCLPATQCFVEGESQHPEAVQSLENEPTQLFPCTLPQEPGPSHLSLQTPG
ADTLDVPWEVLATQPFCLREQSETSELHEAHGSQPSLPREPPGHQHLVHTSPVHTELLRIEGREIQTVEK
AMGIPKEMADRMTPEREPLEREIRGRTENSERDVIGEELIQGTKDREPKKVLARDSQRKEADKDLEGNRE
SLEVEIEMSKDSQKRERKVEKPEPKREWEPADLEVTPDRGVTEEGSHDQKGQIASLTLKPGVGVKDLEGL
ASAPIITGSQADGGKGDPLSPGRQQRGRLSCQTTPAGKASRGDPEPPDHCLFSSVPEASTQSLLTSQSQK
QSTPQPLFSTSSSEIPLPESLHTKPNVRPRRSSRMTPSPHSSAALKPNTTCPTNQPAASRPTSRPTRGRA
NRSSTRTPELIVPVDPELQPSTSTEQPVIPKLTSQVTEGRVQMPEPLLTGPEIQSPTSTEQSVTPDRKPR
ATRGRPSKSPNKTPEPLISTGPELQPPTSIEQPVIPKPTSRVTRGRPRKSSVRTPESVVSTGPELQPLTS
IEQPVIPEPRATRGRPSKSSIKTPESVVPTGPELQPLTSAKQPVTPNLTSRASRGRSSKSIRTPEPVVQT
GPEFHPSTSTEQPDTREPSSQARTRRSAVKTPEASVPTTPELQPFTSKKQPAPKPTALVTQGRTYKPSTE
DCESVGPVAPDFEPSTSTDHLVTPKVTDQSLTLQSSPLSASPVSSTPDLKPPVPIAQPVTPEPIPQANHQ
RKRRAAGKQGSRTVPLGHKSYSALSEPEPQSSASQSSGASEADSPRQKRPRRQASQKTVVIKEEPVETEV
KEEPQETAIPTPEKRKRDHAEEVTQGKPTRSRRTKPNQETAPKVLFTGVMDSRGERAVLALGGSLASSVN
EASHLVTDRIRRTVKFLCALGKGIPILSLNWLYQSRKAGCFLPPDDYLVTDPEQEKNFSFSLRDSLCRAR
ERRLLEDYEIHVTPGVQPPPPQMGEIISCCGGTFLPSMPHSYKLHRVIITCTEDLPRCAIPSRLGLPLLS
PEFLLTGVLKQEATPEAFVLSNLEMSST


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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