NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS37705.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37705.1 Public Mus musculus 17 Tmem178 23 108 98 CCDS HistoryNCBI Gene:68027Re-query CCDS DB by CCDS ID:37705.1Re-query CCDS DB by GeneID:68027See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37705.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025092.4 ENSMUSP00000025092.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025092.4Link to Ensembl Protein Viewer:ENSMUSP00000025092.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000025092Re-query CCDS DB by Protein ID:ENSMUSP00000025092
Original member Current member NCBI NM_026516.2 NP_080792.2 Accepted alive Link to Nucleotide Sequence:NM_026516.2Link to Protein Sequence:NP_080792.2Re-query CCDS DB by Nucleotide ID:NM_026516Re-query CCDS DB by Protein ID:NP_080792Link to BLAST:NP_080792.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080792.2 297 Q9CZ16 297 100% 0 0

Chromosomal Locations for CCDS 37705.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 80944689 80945088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 80986180 80986293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 80989705 80989842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 81000830 81001071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (894 nt):
ATGGAGCCACGGGCGCTCGTCACGGCGCTAAGCCTCGGCCTCAGCCTTTGCTCCCTGGGGCTGCTCGTCA
CGGCCATCTTCACCGACCACTGGTACGAGACCGACCCCCGGCGCCACAAGGAGAGCTGCGAGCGCAGCCG
CGCGGGCGCCGACCCCCCGGATCAGAAGAACCGCCTGATGCCGCTGTCGCACCTGCCGCTGCGGGACTCG
CCTCCCCTGGGGCGCCGGCTGCTCCCCGGCGGCCCCGGGCGCTCAGACCCTGAGTCCTGGCGCTCGCTTC
TGGGGCTTGGCGGGTTGGACGCTGAGTGTGGCCGGCCACTGTTCGCCACCTACTCGGGCCTCTGGAGGAA
GTGCTACTTTCTGGGCATCGACCGGGACATCGACACCCTCATCCTGAAAGGTATTGCACAGCGATGCACA
GCAATCAAGTACCACTTTTCTCAGCCAATCCGCTTAAGAAACATTCCTTTCAATTTAACCAAGACAATCC
AGCAAGATGAATGGCACCTGCTTCATCTAAGAAGAATAACAGCTGGCTTCCTGGGCATGGCGGTGGCTGT
CCTGCTGTGTGGCTGCATTGTGGCCACGGTCAGCTTCTTCTGGGAGGAAAGCCTGACCCAGCACGTGGCC
GGACTCCTATTCCTCATGACAGGGATATTTTGCACCATCTCGCTCTGCACGTACGCCGCCAGTGTCTCCT
ATGACTTGAACCGGGTCCCGAAGCTAATTTACAGCCTGCCTCATGATGTGGAACATGGCTACAGCTGGTC
CATCTTTTGTGCCTGGTGCAGTTTAGGTTTTATCGTGGCAGCTGGAGGTCTCTGCATCGCTTATCCGTTT
ATTAGCCGGACGAAGATTGCACATCTAAAGTCTGGCAGGGACTCCACGGTATGA

Translation (297 aa):
MEPRALVTALSLGLSLCSLGLLVTAIFTDHWYETDPRRHKESCERSRAGADPPDQKNRLMPLSHLPLRDS
PPLGRRLLPGGPGRSDPESWRSLLGLGGLDAECGRPLFATYSGLWRKCYFLGIDRDIDTLILKGIAQRCT
AIKYHFSQPIRLRNIPFNLTKTIQQDEWHLLHLRRITAGFLGMAVAVLLCGCIVATVSFFWEESLTQHVA
GLLFLMTGIFCTISLCTYAASVSYDLNRVPKLIYSLPHDVEHGYSWSIFCAWCSLGFIVAAGGLCIAYPF
ISRTKIAHLKSGRDSTV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH