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Report for CCDS37813.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37813.1 Public Mus musculus 18 Sema6a 23 108 98 CCDS HistoryNCBI Gene:20358Re-query CCDS DB by CCDS ID:37813.1Re-query CCDS DB by GeneID:20358See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37813.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000019791.13 ENSMUSP00000019791.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000019791.13Link to Ensembl Protein Viewer:ENSMUSP00000019791.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000019791Re-query CCDS DB by Protein ID:ENSMUSP00000019791
Original member Current member EBI ENSMUST00000156422.7 ENSMUSP00000121442.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000156422.7Link to Ensembl Protein Viewer:ENSMUSP00000121442.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000156422Re-query CCDS DB by Protein ID:ENSMUSP00000121442
Original member Current member NCBI NM_018744.2 NP_061214.2 Accepted alive Link to Nucleotide Sequence:NM_018744.2Link to Protein Sequence:NP_061214.2Re-query CCDS DB by Nucleotide ID:NM_018744Re-query CCDS DB by Protein ID:NP_061214Link to BLAST:NP_061214.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061214.2 1031 O35464-1 1031 100% 0 0

Chromosomal Locations for CCDS 37813.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 47248383 47249584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 47270609 47270773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 47276586 47276606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 47279116 47279174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 47281120 47281200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 47281292 47281432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 47281795 47281971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 47283309 47283464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 47287423 47287554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 47289976 47290193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 47291096 47291184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 47291888 47292007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 47294020 47294110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 47298186 47298287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 47299077 47299139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 47300084 47300144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 47304104 47304221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 47306356 47306455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3096 nt):
ATGCGGCCAGCAGCCTTACTGCTGTGTCTCACACTGCTACACTGCGCTGGGGCTGGTTTCCCAGAAGATT
CCGAGCCAATCAGTATTTCGCATGGCAACTATACAAAACAGTATCCGGTGTTTGTGGGCCACAAGCCAGG
ACGGAACACCACGCAGAGGCACAGGCTGGACATCCAGATGATCATGATCATGAACAGAACCCTCTACGTT
GCTGCTCGAGACCATATTTATACTGTTGATATAGACACATCCCACACAGAAGAAATTTACTGTAGCAAAA
AACTGACATGGAAATCTAGACAGGCTGACGTAGACACATGCAGGATGAAGGGGAAACATAAGGATGAATG
TCACAACTTCATTAAAGTTCTTCTCAAGAAGAATGATGATACGCTGTTTGTCTGTGGAACCAATGCCTTC
AACCCTTCCTGCAGAAACTACAGGGTCGATACCTTGGAAACTTTTGGGGATGAATTTAGCGGAATGGCCA
GATGCCCTTATGATGCCAAACATGCCAACATCGCTCTGTTTGCAGATGGAAAACTCTACTCGGCTACAGT
GACTGACTTTCTGGCCATTGATGCAGTCATTTACAGGAGCCTCGGAGACAGCCCTACCCTCAGGACTGTC
AAGCATGATTCAAAGTGGTTGAAAGAGCCGTACTTTGTCCAAGCCGTGGATTATGGGGACTATATCTACT
TCTTCTTCAGAGAAATTGCAGTAGAATACAACACTATGGGGAAGGTTGTTTTCCCTAGGGTGGCTCAGGT
CTGTAAGAATGACATGGGAGGGTCTCAGAGAGTCCTGGAGAAGCAGTGGACATCTTTCCTGAAGGCTCGC
CTGAACTGCTCGGTGCCTGGAGACTCTCATTTTTATTTCAATATACTCCAGGCAGTTACAGATGTGATTC
GCATTAATGGCCGTGATGTTGTCTTGGCAACCTTTTCCACACCTTATAACAGCATCCCAGGTTCTGCAGT
CTGTGCCTATGACATGCTTGACATTGCTAATGTTTTCACTGGGAGGTTCAAGGAACAGAAATCACCTGAC
TCTACCTGGACACCCGTTCCAGACGAACGAGTCCCTAAGCCCAGGCCAGGCTGTTGTGCTGGATCATCCT
CTTTAGAAAAATATGCAACCTCCAATGAGTTTCCCGATGATACCCTGAACTTCATTAAGACGCATCCACT
CATGGACGAGGCAGTGCCTTCCATCATCAACAGACCTTGGTTCCTGAGAACAATGGTCAGATACCGCCTG
ACCAAAATTGCAGTAGACAACGCTGCCGGGCCATATCAGAATCACACTGTGGTTTTCCTGGGATCAGAAA
AGGGAATCATCCTGAAGTTCTTGGCCAGGATAGGAAGCAGTGGTTTCCTAAATGGCAGCCTTTTCCTGGA
GGAGATGAATGTTTACAACCCAGAAAAGTGCAGCTATGATGGTGTAGAAGACAAAAGGATCATGGGCATG
CAGCTCGACAGAGCGAGTGGCTCACTCTATGTTGCATTCTCTACTTGTGTGATCAAGGTGCCTCTTGGCC
GCTGTGAGCGACATGGGAAGTGTAAAAAAACCTGCATCGCCTCCAGAGACCCGTATTGTGGGTGGGTAAG
GGAAAGTGGTTCCTGTGCCCATCTGTCACCCCTTAGCAGACTGACATTTGAGCAGGACATTGAGCGTGGC
AATACGGACGGCCTAGGAGACTGTCACAATTCCTTCGTGGCACTGAATGGGCACGCCAGTTCCCTCTATC
CCAGCACCACTACGTCAGATTCGGCATCCCGAGACGGGTATGAGTCTAGGGGAGGCATGCTGGACTGGAA
CGACCTGCTCGAGGCACCTGGCAGCACAGACCCTTTGGGGGCAGTGTCCTCTCATAACCACCAGGACAAG
AAGGGAGTGATTCGGGAAAGTTACCTCAAAAGCAACGACCAGCTTGTTCCTGTCACCCTCCTGGCCATTG
CAGTCATTCTGGCTTTTGTCATGGGGGCCGTCTTCTCGGGCATCATCGTGTATTGTGTGTGCGATCACCG
GCGCAAAGACGTGGCAGTAGTGCAGCGCAAGGAGAAAGAGCTCACTCACTCGCGTCGGGGATCTATGAGC
AGTGTCACCAAGCTCAGTGGCCTCTTTGGGGACACCCAGTCCAAGGACCCAAAGCCTGAGGCCATCCTCA
CACCACTCATGCACAACGGCAAGCTGGCCACGCCTAGCAACACCGCCAAGATGCTCATCAAGGCTGACCA
GCATCACCTAGACCTCACCGCCCTGCCCACCCCAGAGTCCACCCCGACACTGCAGCAGAAACGGAAACCC
AACCGCGGCAGTCGCGAGTGGGAGAGGAACCAGAACATCATCAATGCCTGCACCAAGGACATGCCTCCCA
TGGGTTCCCCTGTGATTCCCACGGACCTGCCCCTCCGGGCCTCCCCAAGCCACATCCCCAGCGTGGTGGT
CCTGCCCATCACGCAGCAGGGCTACCAGCACGAGTACGTAGATCAGCCCAAAATGAGCGAGGTGGTGGCT
CAGATGGCACTGGAGGACCAGGCTGCCACCCTGGAGTATAAGACCATCAAAGAGCACCTGAGTAGCAAGA
GTCCCAACCATGGGGTGAACCTTGTGGAGAACCTGGACAGCCTGCCCCCTAAAGTTCCACAGCGCGAGGC
CTCCCTAGGTCCCCCGGGAACCTCACTGTCACAGACCGGCCTGAGCAAGAGGCTGGAGATGCAACACTCC
TCCTCCTATGGGCTCGAATATAAGAGGAGCTACCCCACGAACTCGCTCACAAGAAGCCACCAGACCACCA
CTCTCAAAAGAAACAATACTAACTCCTCCAATTCCTCCCACCTCTCCAGGAACCAGAGCTTTGGCCGGGG
AGACAACCCACCCCCCGCCCCGCAGCGGGTGGACTCTATCCAGGTGCACAGCTCCCAGCCCTCTGGCCAG
GCCGTGACTGTTTCGAGGCAGCCCAGCCTCAATGCCTACAACTCACTGACGAGGTCGGGGCTGAAGCGCA
CCCCCTCGCTAAAGCCAGATGTACCCCCCAAACCTTCCTTTGCTCCCCTTTCCACATCCATGAAGCCCAA
TGATGCATGTACATAA

Translation (1031 aa):
MRPAALLLCLTLLHCAGAGFPEDSEPISISHGNYTKQYPVFVGHKPGRNTTQRHRLDIQMIMIMNRTLYV
AARDHIYTVDIDTSHTEEIYCSKKLTWKSRQADVDTCRMKGKHKDECHNFIKVLLKKNDDTLFVCGTNAF
NPSCRNYRVDTLETFGDEFSGMARCPYDAKHANIALFADGKLYSATVTDFLAIDAVIYRSLGDSPTLRTV
KHDSKWLKEPYFVQAVDYGDYIYFFFREIAVEYNTMGKVVFPRVAQVCKNDMGGSQRVLEKQWTSFLKAR
LNCSVPGDSHFYFNILQAVTDVIRINGRDVVLATFSTPYNSIPGSAVCAYDMLDIANVFTGRFKEQKSPD
STWTPVPDERVPKPRPGCCAGSSSLEKYATSNEFPDDTLNFIKTHPLMDEAVPSIINRPWFLRTMVRYRL
TKIAVDNAAGPYQNHTVVFLGSEKGIILKFLARIGSSGFLNGSLFLEEMNVYNPEKCSYDGVEDKRIMGM
QLDRASGSLYVAFSTCVIKVPLGRCERHGKCKKTCIASRDPYCGWVRESGSCAHLSPLSRLTFEQDIERG
NTDGLGDCHNSFVALNGHASSLYPSTTTSDSASRDGYESRGGMLDWNDLLEAPGSTDPLGAVSSHNHQDK
KGVIRESYLKSNDQLVPVTLLAIAVILAFVMGAVFSGIIVYCVCDHRRKDVAVVQRKEKELTHSRRGSMS
SVTKLSGLFGDTQSKDPKPEAILTPLMHNGKLATPSNTAKMLIKADQHHLDLTALPTPESTPTLQQKRKP
NRGSREWERNQNIINACTKDMPPMGSPVIPTDLPLRASPSHIPSVVVLPITQQGYQHEYVDQPKMSEVVA
QMALEDQAATLEYKTIKEHLSSKSPNHGVNLVENLDSLPPKVPQREASLGPPGTSLSQTGLSKRLEMQHS
SSYGLEYKRSYPTNSLTRSHQTTTLKRNNTNSSNSSHLSRNQSFGRGDNPPPAPQRVDSIQVHSSQPSGQ
AVTVSRQPSLNAYNSLTRSGLKRTPSLKPDVPPKPSFAPLSTSMKPNDACT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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