NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS37982.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37982.1 Public Mus musculus 19 Zfp518a 23 108 98 CCDS HistoryNCBI Gene:72672Re-query CCDS DB by CCDS ID:37982.1Re-query CCDS DB by GeneID:72672See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37982.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000050092.6 ENSMUSP00000055956.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000050092.6Link to Ensembl Protein Viewer:ENSMUSP00000055956.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000050092Re-query CCDS DB by Protein ID:ENSMUSP00000055956
Original member Current member EBI ENSMUST00000235207.1 ENSMUSP00000158039.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000235207.1Link to Ensembl Protein Viewer:ENSMUSP00000158039.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000235207Re-query CCDS DB by Protein ID:ENSMUSP00000158039
Original member Current member NCBI NM_028319.1 NP_082595.1 Accepted alive Link to Nucleotide Sequence:NM_028319.1Link to Protein Sequence:NP_082595.1Re-query CCDS DB by Nucleotide ID:NM_028319Re-query CCDS DB by Protein ID:NP_082595Link to BLAST:NP_082595.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082595.1 1478 B2RRF6 1478 100% 0 0

Chromosomal Locations for CCDS 37982.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 40911629 40916065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4437 nt):
ATGCCATTTGAACAGACACAGCTATTTTGTGATGAAAAACCAACTATTTTGAAAAAACTTGATACAAGAA
ATGAGATAGCAGATACTATCAGATCAGTATCTACATCAAAAATTTCAGAAACTAGTTTTCAGTATGTACT
AAAAGATGTGAACATCTGTTTACCCAAGATAAATATTCCAAATGAAATCTTAATGAAACATGAAGTTGAA
AAATACAGACTATTATTTCAGAGTAAACCACAGACTGCAAGGAAGTCTATCAGTGTAAAAACAGTAAGCT
GTGCTGAGGAGTGTGTACTGCTTTGTAAATCTGAGCGAGCTGAAGATGAGACTGTAAATATGTCTGCAAA
AATACTCAACTTTAGTTGTTCAAAATGCCAAGACAGTACTCAGTATAGTCCAAATGATTTGCAGAAACAC
TTTGAAATGTGGCATCATGGTGAGTTACCTTCATTTCCTTGTGAAATGTGTAGTTTTTCAGCAAGTGACT
TCCAGATATTTAAACAACACCGAAAAACCCATAGGAACACTTTTGTAAAATGTGATATTTGCAACAGTGA
GCGTTCATATACTTTATTGGACTTGACAAAACACTTCACATCTAAACATTGTGTTAATGGTAATTTTCAG
TGCGAAGAGTGTAGATTCTTTACCCAGGATGTCGGCACATTTGTTCAGCACATTCATAGACATAAAGAAG
TGCACTATAAATGTGGAAAATGCCATCACCTGTGTTTTACCAAGGGAGAGCTGCAGAAGCACCTTCGTGT
CCACTCTGGTACTCTTCCCTTCACTTGTCACTACTGTAGCTATGGTGCCATTCATAAAGACCAACTTATC
AGACATGTTATAACCTTGCATAAAGAACACTTATATGCGAAAGAAAAACTGGAAAGAGACCAATATGATA
AAAGAGTGGCAAAGACTACAACAACAGGACTTAAACTAATACTTAAAAGATATAAAATAGGTCCAACAAA
GACATTTTGGAAACGTAAGACAATTACCAGTGGAAATGATGAAAGTATAGGAAAAAATGCTCAAGCGTTT
AATATAGTGAGCAAAACACAGACTAAATCTGAAGACCAGAGTCAAGAGCAAGTAAATGGAGAAAAGGGTG
AAAAACAGCACTGTGAGAATGGTGATAAGCCCGTCGAATCAGAGTCAGAAAAGGCAACGGTGCTATCCAC
CGGGCAATATAATAAAGCCGACGAGGGAGCAAGTACTACTTCTTCAAGTGTCTTGAGTGCTGTACAAGGA
CCTACGGTGTTACTGGTGAGAAATAATAAGATAACAATTCCTGCTAACTACAGTGCTAAGTTTATGGGCT
TCAAGATGGTAGATGGGAGACAGCATATCGTAATAAAATTGTTGCCTGCCAATAAACAGATTTTACCTTC
ACCAGTCTTACAATCAAACACAGAAAAGAATAGTACAGCTAATTTGTCACCCCAGGCTGTGGCCAACACT
GGGTTTGCAACTGGATTAACAACCAAAGTGAATGACACAGATTTTGTGAAAGCAGCTCCACCTGCATGTT
CATCCCCTGTGCTTGCCAGGAAAGTAATTTCTGAAAAGGAAGCAGCTTTCATATCTGAAAAGAATAATAC
GCTTCAGATGGTAGACGACAGTAAAAGTTTATCTTCATTGCCAACAACATCAACTACATCAGTGCGTGTG
ACTACAAAAGTTGAAGCAAGAGATAATGTTGACTTGTGGGAAAATGATAGCCCTCAGAGTCATCCAGATG
CATCAGATACCTCCATCAGTAGTCCAGATAAAGTCAGCCTTACTCCTAAGCCCAATGCATACAGTTCTGG
AGATATGCATAACTATTGCATTAATTATGTCAACTCTGAGTTACCTGCTGAATCCTCCAACTCTTTTGAG
TTCTCTAACCAAGGATCATTACCTTTTCATAATTATTCAAAGGTAAATAATAAACGCCGTAGGTTTTCAA
GAGCAACACTGTGTGAAAACCTTCAGAAGGAATCTCCAAATAAAACAGTTACTCAGCAATCAACTAGTGA
TAGCGATACAGCTTCACCACTACTGAGAAAAGAGAGCTCTAACTCAGATAACCTGTTTGCGTCCATCAAC
CCTTTAAATGGAACTTTAAAAATAAAAACTGAAATTGAAGAACCATACAATTTAGAAGAAACACAAAACT
TTAATGAACAGAGCCTGTTCACTAATGAAAACCAAAATTTATTGAATGTGACTGAAGAACCTAAATGGAA
TGACATACCCAGTGCCGGCTCCCCTATGATGCCTCGAATTACATCTGTTTTCTCTCTCCAGAGTGAGCAG
GCTTCAGAATTTTTGACACCTGAAGTAAATCAGTTGCTTCAAGATACATTAAAACCAAAATCTGATATAA
AGGAAGATTCTAATAACATTCCAAGTAAAAACCTTCCATTCGATTGTGACCAAACACTTAAAAAGTCTGA
AGAAGTAGTGATAAAATCTTCAAAAGACTTCCAAATGCAAGACGACATCCCAGTTCCTTCTGCCAGTGTA
GGTGTTAATGTGCCTGCAAATGATCTGAATTCAAAATGTAATGGACAAGAAAAACAAGGATTGTCAGTAT
TACAAGATGTGAGAGATTCAGAGGTGACCACTAAAATTCCAAATATCATCACATTACTTAAGACTCAATC
AGATGCAATAATAACACAACAACTTGTAAAAGACAAACTCCGAACCACAACACAAAATTCAGGTCCTGTA
TATGTTCAGAATCCATTTCTAACCTCAGAGCAGAAAAATCCTGTTTTTGTTCAAACTCCAAAAGGTTTTA
TTATACCACTGCATGTTGCTAACAAGCCTGGATTGCACGTTTTTTCTGGAAGACCAGTTCCTTTGGTTAA
TACTCGGAGTGTGCCTGCTACTCTCCTTGTAAACAAGAAACCTGGAATGCTTTTGGCAACTAATAATGGG
AAACCTGAAAGTGTTCCCACGGTGAAGACTGAGAATGTTCATAGTTACGGAACTGTGACTAAGGAACCTT
GCAAAACACCTTTTCTGAAGGCAGAACACAATAACAGTTGTCTTACACCTGGACTTTGTTCCAGCATTGG
AAATTGTGTGAACATGAAAACTTGCTCAGAGAATACATTGCCATTGAAAGGTTCTTACATTATTAAAACA
TCAGTAAATTCTTCAGTGAAAGCTGTTCCTAACATTCTACCTGAGCAGCAGGGCCCTAAGATGAATATCT
TGGATACAGTAAAGCAACAGAATGAAAATTTACCAAAAGCATCTCTCTACACCCTCATGCCTGACGGTAA
ACAAGCTGTATTTTTTAAGTGTGTGATGCCAAATAACACTAAACTGCTTAAGCCTAAGTTAGTCCAAAGT
AGTACCTACCAACATATTCAGCCAAAGAGACCTGCAGGAGCACCACAGAAAATACTCGTAAAGATTTTTA
ATCCTGTTTTAAGTATGAGTGCTTTTAATAATCTTTCAGCTAGCAACTCTGCATCCTCATTCCAGAAAGA
GATTGTACCATCTAAACCAACTGTACATGGAGAGCAGAAAGAGCCAGAAACTTCTAGAAATGCCTTACCA
GTCTTAGTGCATGGTTTGATGCCAGCAAATGAAACTGTTCATTCTTCTACTACAGCATGCCCAGGATCTT
CTGAGGAACCAGTATATATCAGTGAGCGTTCAGAAACAAGAGTTTTAAGAGGTAAAGCAAATTGTGCAGT
CGAGAGAAATTTCAATAAAAGAAAGACTTGTAAAAATAAGTTTGCAAAAATTAAAACTCGGATAGATCAA
GATTCTGAAACTGCTTTTGTATCTAGAAACAGAAGCTGTAAACGAAAGTACATTGATAATTACCAAGAAC
CTCCAAGGAAAAAGTCAACATTGAATAGAAAAGGTAAAGAAAGGGCTAGTGCTGAAGATGTCCAGGAAGC
ATTTGGATTTAGCAGACCTAGGCTTCCAAAGGATTCTAGTAGAACTTTGAGACTTTTCCCTTTTAGTTCC
AAACAGCTTGTGAAATGTCCTAGGAGAAACCAACCAGTTGTGGTCTTGAACCATCCTGATGCAGATACCC
CAGAAGTAGAACGTGTAATGAAAACTATCGCAAAGTTTAATGGGCATGTACTGAAGGTTTCATTGTCACA
AACAACTATTAATGCTTTACTGAAGCCAGTTTCTAACACTTCTGAAACAACTTACAATGACTTTTCCAAG
AGACAAAAAATGCTTAAACCTGTTAATTCTGTGAAAGAAAGATTTGTGCTAAAACTAACACTCAAAAAAA
CAAGCAAAAATAATTACCAGATTGTAAAAACTACCTCCGAAGATGTCTTGAAATCTCAGTTTAACTGCTG
GTTCTGTGGTAGAGTTTTTGACAATCAAGATGTGTGGGCTGGCCATGGACAGAGACATTTAGTGGAAGCT
ACTCGGGATTGGAATATGTTAGAATAA

Translation (1478 aa):
MPFEQTQLFCDEKPTILKKLDTRNEIADTIRSVSTSKISETSFQYVLKDVNICLPKINIPNEILMKHEVE
KYRLLFQSKPQTARKSISVKTVSCAEECVLLCKSERAEDETVNMSAKILNFSCSKCQDSTQYSPNDLQKH
FEMWHHGELPSFPCEMCSFSASDFQIFKQHRKTHRNTFVKCDICNSERSYTLLDLTKHFTSKHCVNGNFQ
CEECRFFTQDVGTFVQHIHRHKEVHYKCGKCHHLCFTKGELQKHLRVHSGTLPFTCHYCSYGAIHKDQLI
RHVITLHKEHLYAKEKLERDQYDKRVAKTTTTGLKLILKRYKIGPTKTFWKRKTITSGNDESIGKNAQAF
NIVSKTQTKSEDQSQEQVNGEKGEKQHCENGDKPVESESEKATVLSTGQYNKADEGASTTSSSVLSAVQG
PTVLLVRNNKITIPANYSAKFMGFKMVDGRQHIVIKLLPANKQILPSPVLQSNTEKNSTANLSPQAVANT
GFATGLTTKVNDTDFVKAAPPACSSPVLARKVISEKEAAFISEKNNTLQMVDDSKSLSSLPTTSTTSVRV
TTKVEARDNVDLWENDSPQSHPDASDTSISSPDKVSLTPKPNAYSSGDMHNYCINYVNSELPAESSNSFE
FSNQGSLPFHNYSKVNNKRRRFSRATLCENLQKESPNKTVTQQSTSDSDTASPLLRKESSNSDNLFASIN
PLNGTLKIKTEIEEPYNLEETQNFNEQSLFTNENQNLLNVTEEPKWNDIPSAGSPMMPRITSVFSLQSEQ
ASEFLTPEVNQLLQDTLKPKSDIKEDSNNIPSKNLPFDCDQTLKKSEEVVIKSSKDFQMQDDIPVPSASV
GVNVPANDLNSKCNGQEKQGLSVLQDVRDSEVTTKIPNIITLLKTQSDAIITQQLVKDKLRTTTQNSGPV
YVQNPFLTSEQKNPVFVQTPKGFIIPLHVANKPGLHVFSGRPVPLVNTRSVPATLLVNKKPGMLLATNNG
KPESVPTVKTENVHSYGTVTKEPCKTPFLKAEHNNSCLTPGLCSSIGNCVNMKTCSENTLPLKGSYIIKT
SVNSSVKAVPNILPEQQGPKMNILDTVKQQNENLPKASLYTLMPDGKQAVFFKCVMPNNTKLLKPKLVQS
STYQHIQPKRPAGAPQKILVKIFNPVLSMSAFNNLSASNSASSFQKEIVPSKPTVHGEQKEPETSRNALP
VLVHGLMPANETVHSSTTACPGSSEEPVYISERSETRVLRGKANCAVERNFNKRKTCKNKFAKIKTRIDQ
DSETAFVSRNRSCKRKYIDNYQEPPRKKSTLNRKGKERASAEDVQEAFGFSRPRLPKDSSRTLRLFPFSS
KQLVKCPRRNQPVVVLNHPDADTPEVERVMKTIAKFNGHVLKVSLSQTTINALLKPVSNTSETTYNDFSK
RQKMLKPVNSVKERFVLKLTLKKTSKNNYQIVKTTSEDVLKSQFNCWFCGRVFDNQDVWAGHGQRHLVEA
TRDWNMLE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH