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Report for CCDS38053.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
38053.1 |
Public |
Mus musculus |
2 |
Etl4 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:208618](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:38053.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:208618](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 2 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47
Review status: Provisional (this record has not been manually reviewed by the collaboration)
Attributes |
Inferred exon combination |
Sequence IDs included in CCDS 38053.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000114627.7 |
ENSMUSP00000110274.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000114627.7](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000110274.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000114627](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000110274](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001081006.1 |
NP_001074475.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001081006.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001074475.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001081006](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001074475](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001074475.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 38053.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (5994 nt): ATGTCACTCTGTCCTCCACCCTGTTGTCTTCTTAGATCCTTCTTTACAAACGCAGCTGCTAAGTTGCCGT CCTCTAAGAAGGATGATTTAAGCAGCAAGCAGAAGAAAACCAGCCGAGGTGACAAGACAGAGAGAATTGG AAGCGAAGGAAACTTGACAGAGTATCAGCAGGTGCAGGCTGCAGCAACTTCAGCTCAGAGGAAGGCAGCG GCGGCTCACAAAGAACAAGGGAGAAGCAATCTTCATGTAACATCTCAGGAAGATGCAGCATGCCGCAGGC CCAGGGAACGCCTTTCTAATGGAAACGCCAGGGCTCAGGTTTCCAAGCCTGCCCGAAATATCCCAAGGAG ACACACTCTAGGTGGGCCCCGAAGTTCCAAAGAGATCCTGGGAATGCAGCCATCTGAGATGGACAGGAAG AGAGAGGCGTTCCTAGAACATCTAAAGCAGAAGTACCCCCACCATGCCACAGCCATCATGGGCCACCAGG AGAGGCTGAGGGACCAGACAAAAAGTCCCAAGCTGTCCCACAGTCCTCAACCTCCCAATTTGGGGGATCC GGTTGAACATTTATCAGAGACATCTGGTGACTCTTTGGAAGCCATGTCCGAGGGAGAAGTACCGAGTCCT TTCGCCAGAGGCAGTCGTACTCGCGCGAGCCTTCCCGTGGTGAGGTCGGCCAATCAAACAAAGGAAAGAT CCCTGGGTGTCCTCTACCTCCAGTATGGAGACGAAACCAAACAGCTGCGGATGCCGAATGAAGTCACAAG CACAGACACAATCCGAGCTCTCTTCGTCAGTGCCTTTCCCCAGCAGCTCACCATGAAGATGCTGGAGTCG CCCAGTGTTGCCATCTACATCAAGGATGACAGCAGAAATGTCTACTATGAGTTAAATGATGTGAGGAATA TCCAAGACAGATCCCTTCTCAAAGTATACAACAAGGATCCTTCACATGCATTTAACCACATGACGAAAGC CGTGAACGGAGACATGAGGATGCAGAGAGAAATTGTTTATGCAAGAGGAGATGGGCTTGTTGCCCCCCGA CCAGGATCTGTGGCTCACCCACCTCATGTAATTCCAAACTCCCCACCATCAACTCCGGTGCCCCATTCCT TACCTCCCTCTCCATCCAGAATTCCTTACGGGGGCAGCCGTCCAATGGCTATTCCTGGCAATGCCACCAT CCCCAGGGACAGACTCTCGAGCCTGCCAGTATCCAGATCCATCTCCCCAAGCCCCAGCGCCATTTTGGAA AGAAGAGATGTCAAACCGGATGAAGACATGAGCAGCAAAAACCTGGTTATGTTCAGAAATGAGGGTTTCT ATGCCGACCCTTACCTCTATCATGAAGGACGAATGAGCATAGCCTCATCCCATGGCGGCCACCCTTTGGA TGTCCCAGATCATGTCATTGCGTATCACCGCACAGCGATCCGGTCAGCGAGTGCTTACTGTAGCCCTTCC TTGCAAGCAGAAATGCATATGGAGCAGTCGTTATACAGACAAAAGTCAAGGAAATACCCTGATAGCCATT TGCCTACCTTGGGCTCCAAAACGCCCCCAGCCTCTCCACACCGTGTGGGTGACTTAAGAATGATAGACCT GCACCCGCATCTTAACACACATGGGCCCCCTCACACTCTGCAGCCAGACCGGGCCTCCCCCAGTCGCCAG TCCTTTAAAAAGGAACCCGGCACCCTGGTGTACATCGAAAAGCCACGAAACACTTCAGGATTATCCAGCC TTGTAGACCTGGGGCCTCCTCTAGTTGAGAAGCAAGGTTTTGCTTACAGCACCACTACAATCCCCAAAGA CAGAGAAACCAGAGAGAGGATGCAAGCCATGGAGAAGCAGATTGCCAGTCTAACTGGCCTTGTTCAGTCT GCGCTTTTTAAAGGGCCCATTACAAGTAGTAGCAAAGAGGCGTCTAGTGAGAAAATGGTGAAAGCCACAG CCAACAGGAACCAAGCAGATGGTGCAGGAACGGCCCATGTTTCTGCAGGGAAGGTTCTGGGCTCTGTGGA GTTCTCCCTGCCGCCCAGCCAACCCCTGCCTGCCGGAACCTCGCCCATCCACACTAGCCTGCTTGACATG AGGAGGAACGTGGCTGAACTCAGGCTCCAACTCCAGCAGATGAGGCAGCTCCAGCTGCAGAACCAGGAGA TTCTGAGGGCGATGATGAAGAAGGCTGAGCTGGAAATCAGTAACAAAGTGAAGGAGACCATGAAGAGACT AGAGGATCCGGTACAGCGTCAGCGCACCCTGGTGGAGCAAGAGAGACAGAAGTACCTCCACGAAGAAGAG CGGATTGTCAAAAAGTTATGTGAGCTGGAGGACTTTGTTGAGGACTTGAAGAAGGACTCTTCCTCCACTG GCAGAGTGGTGACCCTGAAAGATGTGGAAGATGGGGCTTTCCTCCTGCGACAAGTGGGAGAAGCTGTGGC CACTCTCAAAGGAGAATTTCCAACTTTGCAAAATAAGATGCGTGCTGTCCTGCGCATAGAAGTTGAGGCA GTAAGGTTCCTGAAGGAAGAGCCACACAAGCTGGACAGTCTCCTGAAGCGTGTGAGGAGCATGACAGATG TCTTGACGATGTTGCGGAGGCATGTCACTGATGGGCTCCTGAAAGGCACCGATGCATCCCAGGCTGCACA GTATGTTGCCATGGAGAAGGCCACAGCTGCAGAGGTCCTGAAGCATCAGGAAGAGACAGCCCATGCCCCT GGGCAACCCCTCCACTGTAGCACTGGAAGCCCTGGCGATGTGAAGTCAGAAGTGGTGCCCCTATCCACCA TGACAGTTCACCATGTACAGAGCTCGCCTGTGGTCATGCAACCTTCCCAGCACTCCTCAGCCTTGATGAA CCCAGCCCAGAACTTGCCTGGAGGAACCAGACCTCACACAGCCAGCCCTCCAGCAATCACACAGGAAGTA ACCTCTGCCCAGTCAGCTCCAGGCCCCCAGTCCCCTCAGACCCCAGTGAATGGTTCCTCCATGCAGAGCT TGTTCATTGAGGAAATTCACAGTGTGAGTGCCAAGAACAGGGCAGTGTCCATTGAGAAGGCAGAAAAGAA ATGGGAAGAAAAAAGGCAAAATCTGGAACACTATAACGGAAAGGAGTTCGAGAAGCTCCTGGAGGAAGCT CAGGCCAACATCATGAAGTCAATTCCAAACCTGGAGATGCCCCCAGCTTCCAGCCCAGTGTCAAAGGGAG ATGCGGCAGGGGATAAGCTGGAGCTGTCAGAAGATTCTCCAAATTCAGAGCAGGAATTGGACAAGATAGG GGGAAAGTCACCCCCTCCTCCACCCCCACCCCCTCGGAGAAGCTACCTTCCTGGATCAGGACTTACCACC ACGAGATCAGGCGATGTGGTCTACACTGGCAGGAGCATGTCTAAGGTGAGCAGTGAAGACCCTGGGCCAA CACCACAGACTAGAGCCACAAAATGTCCCCCGGAGGAACCTGCCTCAGCCTGGGCCCCATCCCCACCACC AGTCCCTGCCCCTTCCTCCAAGGAGGAGGAGGAAGAAGAAGAAGAAGGAGACAAAATCATGGCAGAACTC CAGGCATTCCAGAAGTGTTCCTTTATGGATGTAAATCCAAACAGTCATGCTGAGCAGTCCCGAGCTAACA GCCACCTTAAAGACACTAGGGCAGGCGCCACAGCCCCACCCAAGGAGAAGAAGAATTTGGAATTTTACCA CGAAGATGTACGAAAATCTGATGTTGAATGTGAAAATGGCCCCCAAGTGGAATCTCAAAAGGTTACTGCA GGGGCTCTGAGACCTAGTGGCCCCCCCAAATGGGAAAGAGTCATGGTGGATAGTATATCTGACACCTCAA GAACATCAGAATGTAGAGCTGACACCTTCACAGAGGAAAATGCCACACCCAATAAGAGCTTATTCAGAGA CAGTAGAAATTATTCCCAGAAAAATGTGCCTAAGGTCAGTTTTTCTTCCTCTGGCCTGAACTCATTAGAA GGTGAAATCAACAAAGGGCCTAATGTCTCGGGACTACAGTGTGCTATTCCTGACTTGGAAAATCAGAAGT TAAATTTTGGAAAGACAAAAGAGATAGGCCAACAGGGACAAGAAAATGCAGACAAGAGTCACATTCCTCT CCCAACTCGATCAGCAGAATTCAGTATTCATGATGTCAAAACACAAGATCAAGATGTTCCCGTGACAGGT TATGGCCAAGTTGTCCTGAGATCGAAGGTGGGTAGGCACGCTAATATGAACATGAATGAGGATGGAGAAT CAACTCCAAGTTCTCCCAGTGAGGAACACACAGCCACTGATAACATCGCCTTTATGATCACCAAAACTGC TGTCCAGGTTCTGTCCAGCGGGGAGGTCCATGACATAGTGAGTCAAAAAGGACAAGATGTACAGACAGTT AATATTGATGGAAGGAAAGAGACAGCCTCTCAGCACGAAGGGACAGAAGGGGAAGAACCGGTTGTGTGCC TGGACAAGAAACCAGTTATTATCATTTTTGATGAACCCATGGACATCCGATCTGCATATAAAAGACTCTC AACCATCTTTGAGGAATGCGATGAGGAGCTAGAGAGAATGCTGACAGAGGAAAAGATAGAGGAAGAGGAA GAGGATGAAAACGAAGACTCTGGAGTCCGAACCTCATCCCAAATGTCCTGTGAACAGGTCGACTCGAGAA GTGATAGGATGGGACAAAAGGCAGAGACACAGTCACAGCCCCATGTCCTGTCAGCAGAGTTGCTAACTCC AGGAGTGCAGGGGGTTCGTAAAGCCGAGCAGAGAAAGCTTAGCTCAGCTGATTCTCCAGACTCAGGGAAT AAGTGTGGCATGGTTGATGACCAGTTTGAAAGTCCCAAGAAAAAGTTTAAGTTCAAATTCCCTAAAAAGC AGCTTGCTGCTCTTACACAGGCAATTCGCACAGGCACCAAAACGGGAAAGAAAACCCTGCAGGTGGTTGT CTATGAGGAAGAGGAAGAGGACGGTACTTTGAAACAGCACAAAGAAGCCAAGCGGTTTGAAATCACCAGG TCACAGCCTGAAGATGCCCTCAAAACCATGGCTAGGAGGCAAGAGCAGCTCAGCCCTGAGGGCACCCTTC CGGCATCAAGGACTGATGAAATTAGGAAAAGTACTTACAGAACACTGGACAGCCTGGAGCAGACCATAAA GCAACTTGAAAATACAATCAGTGAAATGAGCCCCAGGGCCCTAGTTGATACCTCATGTTCTTCCAACAGA GATTGTGGTGCAAGCTTGCCCCACATGGCCCAAGAGGTCTCTCCCCGGTCCTTGCTAGTTCTGGATGAAG TACCCCCTGCCCCAGAGCCCCCCACATCCATATCTCCAGCTTCACGTAAGGGCTCCAGCACCACCCCACA GACAAGCCGGATGCCAGTCCCCATGACTTCCAAGAACAGACCCGGAAGCCTGGATAAGGCCAGCAAGCAG TCCAAACTACAGGATCCCCGCCAATACCGTCAGGCTAATGGAAGTGCTAAGAAAGCTGGTGGGGACTGTA AGCCTACTTCCCCCTCCTTACCTGCTTCTAAGATTCCAGCCCTTTCTCCCAGCTCTGGGAAAAGCAGTTC TCTGCCTTCCGCTAGTGGGGACAGCTCTAACCTCCCCAATGCACCTGCTACTAAACCATCGATTGCTTCT ACCCCTCTCAGCCCCCAAGCAGGACGGTCCGCTCACTCCGCTTCCCTCATCCCTTCTGTCTCTAATGGCT CCTTAAAGTTTCAGAGCCCACCTCACGCAGGTAAAGGCCATCATCACCTTTCGTTCGCACTGCAGACTCA AAATGGCCGAGCTGCCCCTACTACCTCTTCCTCCTCATCCCCTCCTTCCCCTGCCTCCCCCACCTCCCTG AATCAAGGTGCCAGGGGCATCAGGACCATCCATACTCCTAGCCTCGCCAGCTACAAAGCACAGAATGGAA GTTCAAGCAAAGCCACCCCATCCACAGCAAAAGAAACGTCTTAA
Translation (1997 aa): MSLCPPPCCLLRSFFTNAAAKLPSSKKDDLSSKQKKTSRGDKTERIGSEGNLTEYQQVQAAATSAQRKAA AAHKEQGRSNLHVTSQEDAACRRPRERLSNGNARAQVSKPARNIPRRHTLGGPRSSKEILGMQPSEMDRK REAFLEHLKQKYPHHATAIMGHQERLRDQTKSPKLSHSPQPPNLGDPVEHLSETSGDSLEAMSEGEVPSP FARGSRTRASLPVVRSANQTKERSLGVLYLQYGDETKQLRMPNEVTSTDTIRALFVSAFPQQLTMKMLES PSVAIYIKDDSRNVYYELNDVRNIQDRSLLKVYNKDPSHAFNHMTKAVNGDMRMQREIVYARGDGLVAPR PGSVAHPPHVIPNSPPSTPVPHSLPPSPSRIPYGGSRPMAIPGNATIPRDRLSSLPVSRSISPSPSAILE RRDVKPDEDMSSKNLVMFRNEGFYADPYLYHEGRMSIASSHGGHPLDVPDHVIAYHRTAIRSASAYCSPS LQAEMHMEQSLYRQKSRKYPDSHLPTLGSKTPPASPHRVGDLRMIDLHPHLNTHGPPHTLQPDRASPSRQ SFKKEPGTLVYIEKPRNTSGLSSLVDLGPPLVEKQGFAYSTTTIPKDRETRERMQAMEKQIASLTGLVQS ALFKGPITSSSKEASSEKMVKATANRNQADGAGTAHVSAGKVLGSVEFSLPPSQPLPAGTSPIHTSLLDM RRNVAELRLQLQQMRQLQLQNQEILRAMMKKAELEISNKVKETMKRLEDPVQRQRTLVEQERQKYLHEEE RIVKKLCELEDFVEDLKKDSSSTGRVVTLKDVEDGAFLLRQVGEAVATLKGEFPTLQNKMRAVLRIEVEA VRFLKEEPHKLDSLLKRVRSMTDVLTMLRRHVTDGLLKGTDASQAAQYVAMEKATAAEVLKHQEETAHAP GQPLHCSTGSPGDVKSEVVPLSTMTVHHVQSSPVVMQPSQHSSALMNPAQNLPGGTRPHTASPPAITQEV TSAQSAPGPQSPQTPVNGSSMQSLFIEEIHSVSAKNRAVSIEKAEKKWEEKRQNLEHYNGKEFEKLLEEA QANIMKSIPNLEMPPASSPVSKGDAAGDKLELSEDSPNSEQELDKIGGKSPPPPPPPPRRSYLPGSGLTT TRSGDVVYTGRSMSKVSSEDPGPTPQTRATKCPPEEPASAWAPSPPPVPAPSSKEEEEEEEEGDKIMAEL QAFQKCSFMDVNPNSHAEQSRANSHLKDTRAGATAPPKEKKNLEFYHEDVRKSDVECENGPQVESQKVTA GALRPSGPPKWERVMVDSISDTSRTSECRADTFTEENATPNKSLFRDSRNYSQKNVPKVSFSSSGLNSLE GEINKGPNVSGLQCAIPDLENQKLNFGKTKEIGQQGQENADKSHIPLPTRSAEFSIHDVKTQDQDVPVTG YGQVVLRSKVGRHANMNMNEDGESTPSSPSEEHTATDNIAFMITKTAVQVLSSGEVHDIVSQKGQDVQTV NIDGRKETASQHEGTEGEEPVVCLDKKPVIIIFDEPMDIRSAYKRLSTIFEECDEELERMLTEEKIEEEE EDENEDSGVRTSSQMSCEQVDSRSDRMGQKAETQSQPHVLSAELLTPGVQGVRKAEQRKLSSADSPDSGN KCGMVDDQFESPKKKFKFKFPKKQLAALTQAIRTGTKTGKKTLQVVVYEEEEEDGTLKQHKEAKRFEITR SQPEDALKTMARRQEQLSPEGTLPASRTDEIRKSTYRTLDSLEQTIKQLENTISEMSPRALVDTSCSSNR DCGASLPHMAQEVSPRSLLVLDEVPPAPEPPTSISPASRKGSSTTPQTSRMPVPMTSKNRPGSLDKASKQ SKLQDPRQYRQANGSAKKAGGDCKPTSPSLPASKIPALSPSSGKSSSLPSASGDSSNLPNAPATKPSIAS TPLSPQAGRSAHSASLIPSVSNGSLKFQSPPHAGKGHHHLSFALQTQNGRAAPTTSSSSSPPSPASPTSL NQGARGIRTIHTPSLASYKAQNGSSSKATPSTAKETS
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