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Report for CCDS38059.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38059.1 Public Mus musculus 2 Abi1 23 108 98 CCDS HistoryNCBI Gene:11308Re-query CCDS DB by CCDS ID:38059.1Re-query CCDS DB by GeneID:11308See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38059.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000126112.7 ENSMUSP00000117335.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000126112.7Link to Ensembl Protein Viewer:ENSMUSP00000117335.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000126112Re-query CCDS DB by Protein ID:ENSMUSP00000117335
Original member NCBI NM_145994.3 NP_666106.1 Updated not alive Link to Nucleotide Sequence:NM_145994.3Link to Protein Sequence:NP_666106.1Re-query CCDS DB by Nucleotide ID:NM_145994Re-query CCDS DB by Protein ID:NP_666106
Current member NCBI NM_145994.4 NP_666106.1 Accepted alive Link to Nucleotide Sequence:NM_145994.4Link to Protein Sequence:NP_666106.1Re-query CCDS DB by Nucleotide ID:NM_145994Re-query CCDS DB by Protein ID:NP_666106Link to BLAST:NP_666106.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666106.1 476 Q8CBW3-3 476 100% 0 0

Chromosomal Locations for CCDS 38059.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 22941872 22942047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 22946576 22946761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 22950184 22950270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 22953435 22953611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 22957018 22957118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 22960707 22960847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 22962401 22962501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 22971083 22971259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 22994523 22994690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23039949 23040065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1431 nt):
ATGGCAGAGCTGCAGATGTTACTAGAGGAGGAGATCCCGTCTGGCAAGAGGGCGCTGATAGAGAGTTACC
AGAACCTGACCCGGGTGGCGGACTACTGTGAAAACAACTATATACAGGCTACAGACAAGAGAAAAGCTCT
AGAAGAGACCAAAGCATATACAACTCAATCTCTAGCTAGTGTTGCTTATCAAATAAATGCATTGGCCAAC
AATGTGCTCCAGCTGCTGGATATCCAAGCATCTCAGCTGCGGAGGATGGAGTCATCCATCAATCACATCT
CACAGACTGTGGATATTCATAAAGAAAAAGTGGCTCGAAGAGAGATTGGTATTTTGACAACAAATAAGAA
TACATCAAGAACTCACAAAATAATCGCACCCGCAAATATGGAGCGTCCTGTCAGGTATATTCGGAAACCT
ATCGACTATACAGTTCTGGATGATGTGGGCCATGGAGTTAAGCACGGAAATAACCAGCCTGCAAGAACTG
GCACATTGTCGAGAACAAACCCTCCCACGCAGAAACCACCAAGCCCTCCCGTGTCGGGCCGAGGGACTTT
GGGACGGAATACCCCTTACAAAACCCTAGAGCCTGTTAAGCCTCCAACAGTTCCCAATGACTACATGACT
AGTCCTGCGAGGCTTGGAAGCCAGCATAGTCCAGGCAGGACAGCTTCTTTAAATCAGAGACCAAGGACGC
ATAGTGGAAGTAGTGGAGGAAGCGGAAGCCGAGAGAACAGTGGGAGCAGCAGCATTGGCATTCCTATTGC
TGTGCCTACGCCCTCACCGCCCACTGCGGGCCCAGCAGCCCCTGGCGCAGCTCCTGGTTCCCAGTATGGC
ACAATGACCAGGCAGATTTCTCGACACAACTCTACCACTTCTTCGACATCTTCTGGTGGATATAGACGAA
CTCCTTCTGTGGCCGCCCAATTCTCTGCTCAGCCTCATGTTAATGGAGGTCCACTTTATTCTCAAAATTC
AATTTCTGTTGCCCCTCCTCCTCCCCCCATGCCTCAGTTGACTCCACAGATCCCTCTCACAGGCTTCGTG
GCCAGGGTGCAGGAAAACATTGCTGATAGCCCAACTCCACCACCACCCCCTCCACCAGATGACATTCCCA
TGTTTGATGACTCTCCGCCTCCTCCGCCACCTCCTCCTGTGGACTATGAAGATGAGGAAGCTGCAGTAGT
TCAGTATAGTGACCCATATGCAGATGGGGACCCTGCATGGGCTCCCAAGAACTATATTGAGAAAGTTGTT
GCAATATATGATTATACAAAAGACAAGGATGATGAGCTGTCCTTTAAAGAGGGTGCAATCATCTATGTTA
TAAAGAAGAATGATGATGGCTGGTTTGAAGGAGTTTGCAATCGAGTGACTGGACTCTTCCCTGGGAACTA
TGTTGAATCAATCATGCACTATACTGATTAG

Translation (476 aa):
MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQATDKRKALEETKAYTTQSLASVAYQINALAN
NVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSRTHKIIAPANMERPVRYIRKP
IDYTVLDDVGHGVKHGNNQPARTGTLSRTNPPTQKPPSPPVSGRGTLGRNTPYKTLEPVKPPTVPNDYMT
SPARLGSQHSPGRTASLNQRPRTHSGSSGGSGSRENSGSSSIGIPIAVPTPSPPTAGPAAPGAAPGSQYG
TMTRQISRHNSTTSSTSSGGYRRTPSVAAQFSAQPHVNGGPLYSQNSISVAPPPPPMPQLTPQIPLTGFV
ARVQENIADSPTPPPPPPPDDIPMFDDSPPPPPPPPVDYEDEEAAVVQYSDPYADGDPAWAPKNYIEKVV
AIYDYTKDKDDELSFKEGAIIYVIKKNDDGWFEGVCNRVTGLFPGNYVESIMHYTD


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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