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Report for CCDS38288.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38288.1 Public Mus musculus 2 Sun5 23 108 98 CCDS HistoryNCBI Gene:76407Re-query CCDS DB by CCDS ID:38288.1Re-query CCDS DB by GeneID:76407See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38288.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028982.4 ENSMUSP00000028982.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028982.4Link to Ensembl Protein Viewer:ENSMUSP00000028982.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000028982Re-query CCDS DB by Protein ID:ENSMUSP00000028982
Original member NCBI NM_029599.2 NP_083875.1 Updated not alive Link to Nucleotide Sequence:NM_029599.2Link to Protein Sequence:NP_083875.1Re-query CCDS DB by Nucleotide ID:NM_029599Re-query CCDS DB by Protein ID:NP_083875
Current member NCBI NM_029599.3 NP_083875.1 Accepted alive Link to Nucleotide Sequence:NM_029599.3Link to Protein Sequence:NP_083875.1Re-query CCDS DB by Nucleotide ID:NM_029599Re-query CCDS DB by Protein ID:NP_083875Link to BLAST:NP_083875.1

Chromosomal Locations for CCDS 38288.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 153856212 153856355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153858423 153858509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153858957 153859124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153860587 153860702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153861429 153861507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153865304 153865412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153865970 153866004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153866902 153866951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153867510 153867571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153868219 153868285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153869415 153869470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153870925 153870998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1047 nt):
ATGCCCCGGACGAGGAACATCGGGGCCTTGTGTACCCTACCTGAAGACACAACTCACAGTGGCAGGCCTA
GGAGGGGCGTCCAAAGAAGCTATATCAGCAGAATGGCAGAGCCAGCCCCGGCAAACATGACCTGGCTCAC
CTACCTAGCCTGCTTCCTGAGGACTCAGACCCAGCAAGTTTTCCTTAACACCTGCAGATGCAAGTTGTTC
TGCCAGAAAGTCATGGAAAAGATGGGCCTTCTGGTCCTCTGTGTTTTTGGCTTCTGGATGTTTTCCATGC
ACTTACCATCAAAAGTGGAAGTCTGGCAGGATGACAGCATAAATGGTCCATTGCAGAGCCTGAGGATGTA
CCAGGAGAAGGTACGACATCACACTGGGGAAATCCAGGACCTACGAGGTAGCATGAACCAGCTCATTGCC
AAACTCCAGAAGATGGAAGCCATATCTGATGAGCAAAAAATGGCCCAGAAAATAATGAAGATGATTCAAG
GTGATTACATTGAAAAGCCAGACTTTGCCCTGAAGTCCATAGGGGCCAGCATCGACTTCGAGCACACGTC
AGCCACGTATAACCACGACAAGGCTCGCTCCTACTGGAACTGGATCCGACTGTGGAACTACGCGCAGCCC
CCGGATGTGATCCTTGAGCCAAACGTGACACCTGGGAACTGCTGGGCCTTTGCCAGTGACCGCGGCCAGG
TGACCATCCGTTTGGCCCAGAAAGTCTACCTGTCCAACATTACACTGCAGCACATTCCTAAGACAATCTC
GTTGTCGGGAAGCCTGGACACCGCACCAAAGGACTTTGTCATCTATGGCTTGGAGAGCCTACCCAGGGAG
GAAGTGTTCCTAGGGGCATTCCAGTTTCAGCCAGAAAACATCATCCAAACGTTTCAGCTCCAGAACCTGC
CACCCAGGAGCTTTGCTGCAGTCAAGGTGAAGATCTCCAGCAACTGGGGGAACCCTCGCTTCACCTGCAT
GTACCGTGTGCGTGTGCACGGCTCTGTAACCCCTCCCAAAGACTCACACCTAGAGCCCCTATCCTAG

Translation (348 aa):
MPRTRNIGALCTLPEDTTHSGRPRRGVQRSYISRMAEPAPANMTWLTYLACFLRTQTQQVFLNTCRCKLF
CQKVMEKMGLLVLCVFGFWMFSMHLPSKVEVWQDDSINGPLQSLRMYQEKVRHHTGEIQDLRGSMNQLIA
KLQKMEAISDEQKMAQKIMKMIQGDYIEKPDFALKSIGASIDFEHTSATYNHDKARSYWNWIRLWNYAQP
PDVILEPNVTPGNCWAFASDRGQVTIRLAQKVYLSNITLQHIPKTISLSGSLDTAPKDFVIYGLESLPRE
EVFLGAFQFQPENIIQTFQLQNLPPRSFAAVKVKISSNWGNPRFTCMYRVRVHGSVTPPKDSHLEPLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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