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Report for CCDS38310.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38310.1 Public Mus musculus 2 Actr5 23 108 98 CCDS HistoryNCBI Gene:109275Re-query CCDS DB by CCDS ID:38310.1Re-query CCDS DB by GeneID:109275See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38310.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000045644.8 ENSMUSP00000046658.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000045644.8Link to Ensembl Protein Viewer:ENSMUSP00000046658.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000045644Re-query CCDS DB by Protein ID:ENSMUSP00000046658
Original member Current member NCBI NM_175419.4 NP_780628.3 Accepted alive Link to Nucleotide Sequence:NM_175419.4Link to Protein Sequence:NP_780628.3Re-query CCDS DB by Nucleotide ID:NM_175419Re-query CCDS DB by Protein ID:NP_780628Link to BLAST:NP_780628.3

Chromosomal Locations for CCDS 38310.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 158625142 158625516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158626327 158626556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158628057 158628226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158631463 158631680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158632272 158632454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158635307 158635426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158636008 158636147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158636668 158636800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158638633 158638890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1827 nt):
ATGGAGGCCAACGTGTTCCGCTTCCGAGATGCCCGCTCTGCTCCGGATCCCGTGCTCGAAGCCGGGCCGG
TGGCCTTCGGGTCGCAGCCGGTGCCTCTGGTGCTGGACAACGGGTCGTTCCAGGCTCGGGCCGGGTGGGC
GTGCCCCGGGCCGGACCCCGGTCCCGAGCCTCGCCTGCAGTTCCGCGCCGTGTGTGCGCGCGGCCGCGGC
GGGGCGCGCGGCGGGCCGGGGCCGCAGGTGGGCAACGCGCTGGGAAGCCTGGAGCCTCTGCGCTGGATGC
TGCGCTCGCCCTTCGATCGCAACGTCCCGGTCAACCTGGAACTGCAGGAACTGCTGCTGGACTACAGCTT
CCAGCACCTCGGCGTCTCCTCGCAGGGCTGCGTTGATCATCCCATAGTTCTGACAGAGGCTGTGTGTAAC
CCCCTCTACTCCCGTCAAATGATGTCGGAGCTCCTTTTCGAATGCTACAGGATCCCGAAGGTTGCCTATG
GGATAGACAGCCTCTTCAGCTTCTACCACAACGTGCCCAAGAATGCCCTTTCCAGCGGCCTCATCATTTC
ATCCGGCTACCAGTGCACACACATCTTACCGGTCTTGGAAGGGAGGCTCGATGCCAAAAACTGCAAGCGC
ATCAATCTTGGAGGAAGTCAGGCAGCTGGCTACCTGCAGCGGCTTCTCCAGCTGAAGTATCCAGGCCACC
TGGCAGCCATCACACTCAGCCGCATGGAGGAGATCCTGCAGGAGCATAGCTACATTGCCGAGGACTACGG
GGCAGAATTGCAGAAGTGGCAGTGTCCCGATTACTACGAGAACAATGTCCACAAGATGCAGCTCCCGTTC
TCCAGCAAGCTCCTGGGCAGCACACTGACGGCGGAGGAGAAGCAGGAGCGGCGGCAGCAGCAGCTGCGCC
GGCTGCAAGAGCTCAACGCCCGGCGGAGGGAGGAGAAGCTGCAGCTGGATCAGGAGCGGCTGGAGCGGCT
GTTGTATGTGCAGGAGCTCCTAGAGGAAGGACAGATGGACCAGTTTCACAAAGCTCTGATCGAGCTGAAC
ATGGACTCCCCAGAAGAACTGCAGTCCTACATACAGAAGCTCACCTTGGCGGTGGAGCAGGCCAAACAGA
AAATCCTGCAGGCCGAAGCCAGCCTGGAGGTGGATGTGGTAGACAGCAAGCCAGAGACCCCTGACCTGGA
GCCGCTGGAACCCACCATGGAGGATGTGGAGAACATCAGTGATTTCGAGCCTTTGTTCTCGGAGGAAACG
CCCGAAGTGGAGAAGCCGCAAGTCACCACAGTCCAGCCCGTGTTTAACTTGGCAGCGTATCATCAGCTGT
CTGTTGGGACAGAGAGGATCCGTGCTCCGGAGATTATTTTCCAGCCATCCCTCATAGGAGAGGAGCAGGC
GGGGATTGCAGAGACCCTCCATTTTGTCCTGGACAGGTACCCAAAGGCCATTCAGGACACCCTGGTTCAG
AACGTTTTCCTTACCGGTGGGAACGTGATGTACCCAGGCATGAAGGCCCGAGTGGAGAAGGAGCTGCTGG
AGATGAGGCCCTTCCAGTCCTCCTTCCAGGTTCAGCTCGCCTCGAACCCTGTGCTGGATGCGTGGTACGG
TGCCCGTGACTGGGCCTTGGATCACCTAGAAGACAGTGGAGCCTGGGTCACCAGGAAGGACTATGAAGAA
AAGGGGGGCGAGTACCTCAAGGAACATTGCGCCTCCAACACGTACGTCCCCATCCGCCTGCCTAAGCAGG
CCTCACGTGCCTCAGAGACGCAGACTTCCGGCCGAGGCTCCAGCGCCAGTGGAAGTGGGGCTGGTGATCA
GGCCTAG

Translation (608 aa):
MEANVFRFRDARSAPDPVLEAGPVAFGSQPVPLVLDNGSFQARAGWACPGPDPGPEPRLQFRAVCARGRG
GARGGPGPQVGNALGSLEPLRWMLRSPFDRNVPVNLELQELLLDYSFQHLGVSSQGCVDHPIVLTEAVCN
PLYSRQMMSELLFECYRIPKVAYGIDSLFSFYHNVPKNALSSGLIISSGYQCTHILPVLEGRLDAKNCKR
INLGGSQAAGYLQRLLQLKYPGHLAAITLSRMEEILQEHSYIAEDYGAELQKWQCPDYYENNVHKMQLPF
SSKLLGSTLTAEEKQERRQQQLRRLQELNARRREEKLQLDQERLERLLYVQELLEEGQMDQFHKALIELN
MDSPEELQSYIQKLTLAVEQAKQKILQAEASLEVDVVDSKPETPDLEPLEPTMEDVENISDFEPLFSEET
PEVEKPQVTTVQPVFNLAAYHQLSVGTERIRAPEIIFQPSLIGEEQAGIAETLHFVLDRYPKAIQDTLVQ
NVFLTGGNVMYPGMKARVEKELLEMRPFQSSFQVQLASNPVLDAWYGARDWALDHLEDSGAWVTRKDYEE
KGGEYLKEHCASNTYVPIRLPKQASRASETQTSGRGSSASGSGAGDQA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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