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Report for CCDS38342.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38342.1 Public Mus musculus 2 Adnp 23 108 98 CCDS HistoryNCBI Gene:11538Re-query CCDS DB by CCDS ID:38342.1Re-query CCDS DB by GeneID:11538See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38342.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000057793.10 ENSMUSP00000056809.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000057793.10Link to Ensembl Protein Viewer:ENSMUSP00000056809.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000057793Re-query CCDS DB by Protein ID:ENSMUSP00000056809
Original member Current member EBI ENSMUST00000088001.5 ENSMUSP00000085316.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000088001.5Link to Ensembl Protein Viewer:ENSMUSP00000085316.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000088001Re-query CCDS DB by Protein ID:ENSMUSP00000085316
Original member Current member NCBI NM_001310086.1 NP_001297015.1 Accepted alive Link to Nucleotide Sequence:NM_001310086.1Link to Protein Sequence:NP_001297015.1Re-query CCDS DB by Nucleotide ID:NM_001310086Re-query CCDS DB by Protein ID:NP_001297015Link to BLAST:NP_001297015.1
Original member Current member NCBI NM_009628.3 NP_033758.2 Accepted alive Link to Nucleotide Sequence:NM_009628.3Link to Protein Sequence:NP_033758.2Re-query CCDS DB by Nucleotide ID:NM_009628Re-query CCDS DB by Protein ID:NP_033758Link to BLAST:NP_033758.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001297015.1 1108 Q9Z103 1108 100% 0 0
NP_033758.2 1108 Q9Z103 1108 100% 0 0

Chromosomal Locations for CCDS 38342.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 168182047 168185172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 168187567 168187659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 168189282 168189389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3327 nt):
ATGTTCCAACTTCCTGTCAACAATCTTGGCAGTTTAAGAAAAGCCCGGAAAACTGTGAAAAAAATACTTA
GTGACATTGGGTTGGAATACTGTAAAGAACATATAGAAGATTTTAAACAGTTTGAACCTAATGACTTTTA
TTTGAAAAACACTACATGGGAGGATGTAGGACTGTGGGACCCTTCTCTTACGAAAAATCAGGACTATCGG
ACAAAACCTTTTTGCTGCAGTGCTTGTCCGTTTTCCTCAAAATTCTTCTCTGCCTACAAAAGTCATTTCC
GGAATGTCCATAGTGAAGACTTTGAAAATAGGATTCTCCTTAACTGCCCTTACTGTACCTTCAATGCAGA
TAAAAAGACTTTGGAAACACACATTAAAATATTTCATGCTCCAAACTCCAGCGCACCAAGTAGCAGCCTC
AGCACTTTCAAAGATAAAAACAAAAACGATGGCCTTAAACCTAAGCAGGCTGACAATGTAGAGCAAGCCG
TGTATTACTGCAAGAAGTGCACTTACCGAGACCCTCTCTACGAGATCGTCAGGAAGCACATCTACAGGGA
ACATTTTCAACACGTGGCAGCACCCTACATAGCAAAAGCAGGAGAAAAATCACTCAATGGTGCAGTCTCC
CTGGGCACAAATGCCCGAGAGGAGTGTAACATCCACTGCAAGCGATGCCTTTTCATGCCCAAGTCCTATG
AAGCTTTGGTACAGCATGTCATTGAGGACCATGAACGGATAGGCTATCAGGTCACTGCCATGATCGGACA
CACAAATGTTGTAGTTCCCCGAGCCAAGCCCTTGATGCTGATAGCTCCCAAACCTCAAGACAAAAAGGGC
ATGGGACTCCCACCACGAATCAGCTCCCTTGCTTCTGGAAATGTCCGGTCGTTGCCATCACAGCAGATGG
TAAACCGATTGTCAATACCAAAGCCCAACTTAAATTCAACGGGAGTCAACATGATGTCCAATGTTCACCT
GCAGCAAAACAACTATGGAGTCAAATCTGTGGGCCAGAGCTATGGTGTTGGCCAGTCAGTGAGGCTGGGA
CTAGGTGGCAATGCTCCAGTTTCCATCCCTCAACAGTCTCAGTCCGTGAAACAGTTACTTCCAAGTGGGA
ATGGGAGGTCTTTTGGGCTAGGTGCTGAGCAGAGGCCCCCAGCAGCAGCCAGGTACTCCCTGCAGACTGC
CAACACCTCTCTACCCCCAGGCCAAGTGAAGTCTCCCTCTGTGTCTCAGTCACAGGCATCTAGAGTATTA
GGTCAGTCCAGTTCTAAACCTCCACCAGCCGCCACAGGCCCTCCTCCAAGCAACCACTGTGCCACTCAGA
AGTGGAAAATCTGTACAATCTGTAACGAGCTTTTCCCTGAGAATGTCTATAGCGTTCACTTCGAAAAGGA
GCATAAAGCTGAGAAAGTCCCAGCCGTAGCTAACTACATTATGAAAATACACAATTTTACTAGCAAATGC
CTCTACTGTAATCGCTATTTGCCTACAGATACCCTACTCAACCATATGTTAATTCATGGTCTGTCTTGTC
CGTATTGCCGTTCCACCTTCAATGATGTAGAGAAGATGGCAGCACACATGCGAATGGTTCATATTGATGA
AGAGATGGGGCCTAAAACGGATTCTACTTTGAGCTTTGATTTGACATTGCAACAGGGCAGTCACACCAAC
ATTCATCTCCTGGTGACCACATACAACCTGAGGGATGCCCCGGCTGAATCAGTTGCTTACCATGCCCAAA
ATAATGCCCCAGTTCCTCCAAAGCCACAACCAAAAGTTCAGGAAAAAGCAGATGTCCCGGTTAAAAGTTC
ACCTCAAGCTGCAGTGCCCTATAAAAAAGATGTTGGGAAGACCCTTTGCCCTCTTTGCTTTTCAATACTA
AAAGGACCCATATCTGATGCACTTGCACATCATTTACGAGAAAGACACCAAGTTATTCAGACAGTTCATC
CGGTTGAGAAAAAGCTAACTTACAAATGTATCCATTGCCTTGGTGTGTATACTAGCAACATGACAGCCTC
AACCATCACTCTGCATCTAGTCCACTGCAGGGGTGTTGGAAAAACCCAGAATGGCCAGGACAAGACAAAC
GCACCTTCTCGGCTCAATCAGTCTCCAGGCCTGGCCCCTGTGAAGCGCACGTATGAGCAGATGGAGTTTC
CACTGCTAAAAAAGCGGAAGCTGGAGGAGGATGCTGATTCCCCTAGCTGCTTTGAAGAGAAGCCAGAAGA
GCCTGTTGTTTTAGCTTTAGACCCCAAGGGTCATGAAGATGATTCTTATGAGGCTAGGAAAAGCTTTCTC
ACAAAGTACTTCAACAAACAGCCCTATCCCACCAGGAGAGAAATTGAGAAGTTAGCTGCCAGTCTATGGC
TATGGAAGAGTGACATTGCCTCCCATTTCAGTAACAAGAGGAAGAAGTGTGTCCGCGACTGTGAAAAGTA
CAAGCCTGGTGTGCTGCTAGGTTTTAACATGAAAGAATTAAATAAAGTCAAACACGAGATGGATTTTGAT
GCTGAGTGGCTGTTTGAAAATCACGATGAGAAAGACTCAAGAGTCAATGCTAGCAAGACTGTTGACAAAA
AGCATAACCTTGGGAAAGAAGATGATAGCTTCTCAGATAGTTTTGAACATTTGGAAGAAGAATCCAATGG
AAGCGGGAGTCCTTTTGACCCTGTCTTTGAAGTTGAGCCTAAAATTCCCAGTGATAATTTAGAGGAGCCT
GTACCGAAGGTTATTCCGGAAGGTGCTTTGGAATCTGAGAAGCTAGACCAAAAAGAGGAGGAGGAGGAGG
AGGAGGAGGAGGATGGTTCAAAATATGAAACTATCCATTTGACTGAGGAACCAGCCAAATTAATGCATGA
TGCCTCTGATAGTGAGGTAGACCAAGATGATGTAGTTGAGTGGAAAGATGGTGCTTCACCATCTGAGAGT
GGGCCTGGTTCCCAACAAATCTCAGACTTTGAGGATAATACATGTGAAATGAAACCAGGAACCTGGTCTG
ATGAGTCTTCCCAGAGTGAAGATGCAAGGAGCAGTAAGCCAGCTGCCAAAAAAAAGGCTACAGTGCAAGA
TGACACAGAGCAGTTAAAATGGAAGAATAGTTCCTATGGAAAAGTTGAAGGGTTTTGGTCCAAGGACCAG
TCACAGTGGGAAAATGCATCTGAGAATGCAGAGCGCTTACCAAACCCACAGATTGAGTGGCAGAATAGCA
CAATTGACAGTGAGGACGGGGAGCAGTTTGACAGCATGACTGACGGAGTTGCTGATCCCATGCATGGCAG
CTTAACTGGAGTGAAGCTGAGCAGCCAGCAAGCCTGA

Translation (1108 aa):
MFQLPVNNLGSLRKARKTVKKILSDIGLEYCKEHIEDFKQFEPNDFYLKNTTWEDVGLWDPSLTKNQDYR
TKPFCCSACPFSSKFFSAYKSHFRNVHSEDFENRILLNCPYCTFNADKKTLETHIKIFHAPNSSAPSSSL
STFKDKNKNDGLKPKQADNVEQAVYYCKKCTYRDPLYEIVRKHIYREHFQHVAAPYIAKAGEKSLNGAVS
LGTNAREECNIHCKRCLFMPKSYEALVQHVIEDHERIGYQVTAMIGHTNVVVPRAKPLMLIAPKPQDKKG
MGLPPRISSLASGNVRSLPSQQMVNRLSIPKPNLNSTGVNMMSNVHLQQNNYGVKSVGQSYGVGQSVRLG
LGGNAPVSIPQQSQSVKQLLPSGNGRSFGLGAEQRPPAAARYSLQTANTSLPPGQVKSPSVSQSQASRVL
GQSSSKPPPAATGPPPSNHCATQKWKICTICNELFPENVYSVHFEKEHKAEKVPAVANYIMKIHNFTSKC
LYCNRYLPTDTLLNHMLIHGLSCPYCRSTFNDVEKMAAHMRMVHIDEEMGPKTDSTLSFDLTLQQGSHTN
IHLLVTTYNLRDAPAESVAYHAQNNAPVPPKPQPKVQEKADVPVKSSPQAAVPYKKDVGKTLCPLCFSIL
KGPISDALAHHLRERHQVIQTVHPVEKKLTYKCIHCLGVYTSNMTASTITLHLVHCRGVGKTQNGQDKTN
APSRLNQSPGLAPVKRTYEQMEFPLLKKRKLEEDADSPSCFEEKPEEPVVLALDPKGHEDDSYEARKSFL
TKYFNKQPYPTRREIEKLAASLWLWKSDIASHFSNKRKKCVRDCEKYKPGVLLGFNMKELNKVKHEMDFD
AEWLFENHDEKDSRVNASKTVDKKHNLGKEDDSFSDSFEHLEEESNGSGSPFDPVFEVEPKIPSDNLEEP
VPKVIPEGALESEKLDQKEEEEEEEEEDGSKYETIHLTEEPAKLMHDASDSEVDQDDVVEWKDGASPSES
GPGSQQISDFEDNTCEMKPGTWSDESSQSEDARSSKPAAKKKATVQDDTEQLKWKNSSYGKVEGFWSKDQ
SQWENASENAERLPNPQIEWQNSTIDSEDGEQFDSMTDGVADPMHGSLTGVKLSSQQA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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