NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS38549.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38549.1 Public Mus musculus 3 Rprd2 23 108 98 CCDS HistoryNCBI Gene:75137Re-query CCDS DB by CCDS ID:38549.1Re-query CCDS DB by GeneID:75137See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38549.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000090791.7 ENSMUSP00000088297.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000090791.7Link to Ensembl Protein Viewer:ENSMUSP00000088297.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000090791Re-query CCDS DB by Protein ID:ENSMUSP00000088297
Original member Current member NCBI NM_001081293.2 NP_001074762.1 Accepted alive Link to Nucleotide Sequence:NM_001081293.2Link to Protein Sequence:NP_001074762.1Re-query CCDS DB by Nucleotide ID:NM_001081293Re-query CCDS DB by Protein ID:NP_001074762Link to BLAST:NP_001074762.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074762.1 1469 Q6NXI6-1 1469 100% 0 0

Chromosomal Locations for CCDS 38549.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 95763680 95766420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95771996 95772196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95774112 95774372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95776515 95776797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95780415 95780590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95784214 95784340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95785054 95785106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95786320 95786451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95787284 95787384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95790100 95790229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95818547 95818751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4410 nt):
ATGGCGGCCGGCGGCGGCGGAGGCAGCAGTAAGGCCTCCTCCTCGTCGGCCTCGTCCGCAGGGGCCCTGG
AGTCTTCGTTGGATCGAAAATTCCAGTCGGTGACCAACACCATGGAATCCATTCAAGGCTTGTCGTCCTG
GTGTATAGAAAACAAGAAACACCACAGTACAATCGTCTACCATTGGATGAAGTGGCTCCGGAGATCTACA
TATCCCCATCGTTTGAATCTCTTTTATCTTGCCAATGATGTCATACAGAATTGTAAACGGAAAAATGCAA
TCATATTTCGTGAATCATTTGCTGATGTGCTTCCTGAAGCAGCTGCTCTAGTGAAGGATCCATCCGTCTC
TAAGTCTATAGAACGAATCTTTAAAATCTGGGAAGATCGAAATGTGTACCCAGAAGACATGATTGTGGCA
TTGAGAGAAGCTTTAATGGACAGAGCAGCTTCCCATAATGCCAGACTGCAAAAACTGCAATGTTTTCCAG
GTACCACTTTCAAAACTCAGAAGCAGCTGAAAGAAAATCTGAACAAACAACCGAATAAGCAGTGGAAGAA
ATCACAAACATCCACGAATCCAAAAGCTGCTCTCAAATCTAAGATTGTTGCTGAGTTTCGATCTCAGGCC
CTCATTGAAGAGTTGCTGATGTACAAACGATCAGAAGATCAGATAGAACTGAAGGAGAAACAGTTGTCAA
CTATGAGAGTGGATGTCTGCAGCACAGAAACTCTCAAGTGTTTAAAAGATAAAACAGGTGGAAAGAAGTT
CTCCAAAGAATTTGAAGAAGCAAGTTCCAAGCTAGAGGAGTTTGTGAATGGATTAGATAAACAGGTGAAA
AATGGGCCCTCACTAACAGAAGCATTAGAGAACGCTGGAATTTTCTATGAAGCACAGTACAAGGAAGTGA
AAGTGGTCGCTAACGCTTACAAAACCTTCGCTAACCGAGTAAACAACTTAAAGAAGAAGTTGGATCAATT
GAAGTCAACCCTTCCTGATCCTGAGGAATCACCAGTCCCCTCTCCAAGTATGGATGCTCCTTCCCCAACT
GGTTCTGAGTCTCCATTCCAGGGCATGGGAGGTGAAGAACCCCAGTCACCGGCCATGGAGAGTGACAAGT
CTGCCACACCCGAGCCTGTGACTGATAACCGTGATGTGGAAGACATGGAACTCTCAGATGTGGAAGATGA
TGGATCAAAAATCATTGTGGAGGACCGGAAAGAAAAGCCTGTGGAGAAACCTGCTGTCTCCACTGGTGTG
CCCACCAAGTCAACAGAAAGTGTCTCGAAAGCCTCACCGTGTGCCCCACCGTCTGTGCCCACGACGGCAG
CTCCACCTCTCCCGAAGCCTCTGAGCACTGCACTTCTGTCCCCTTCCCCAACTTTGGTTTTGCCAAACCT
GGCAAATGTGGATCTGGCAAAGATCAGTTCCATCCTTAGCAGCCTAACATCAGTCATGAAAAATACGGGG
GTCAGTTCTGCATCAAGACCTTCTCCAGGAATTCCTACCAGTCCCAGCAACCTCAGCAGTGGCCTGAAAA
CACCTGCACCTGCCACAACACCATCTCACAACCCTCTGGCAAATATCCTGTCAAAGGTGGAGATCACCCC
AGAGAGCATTCTCTCTGCTCTTTCTAAAACCCAGACACAGTCAGCCCCTGCACTCCAAGGCTTGTCATCA
TTACTTCAGAGTGTTACTGCGAACCCTGTGCCAGCCAGTGAAGTCACTTCCCAGAGCACCACAGCCTCCC
CTGCGAGCACCACAGGCTCTGCCGTAAAGGGGAGAAATCTACTCTCCAGTACCCAGTCTTTTATTCCCAA
AAGCTTCAACTATTCTCCTAGTTCTTCAACTTCTGAAGTCTCTTCCACTTCAGCAAGCAAGGCGTCAGTT
GGGCAGAGCCCGGTGCTCCCAAGCACTACGTTTAAACTACCATCCAGTTCTTTGGGATTTACTGGTACCC
ACAATCCTAGCCCTGCTGCCCCACCTACTGAAGTTGCCGTGTGCCAATCCTCAGAGGTCTCCAAGCCAAA
GCCAGAATCAGAGTCCACCTCTCCAAGCCTGGAAATGAAGATCCACAACTTCTTGAAAGGTAATCCTGGT
TTCAGTGGCTTAAACTTAAACATCCCGATCCTAAGCAGCTTGGGATCCAGTGCCCCATCAGAGGGCCATG
CCTCAGACTTCCAGCGTGGTCCTACTAGCACTTCAGTTGACAGCATCGATGGAACTCCTGTTCGGGATGA
ACGGAGTGGGACACCCACCCAGGATGAGATGATGGATAAGCCCACATCCAGCAGCGTAGACACTATGTCC
CTGCTGTCTAAGATCATCAGCCCTGGTTCCTCAACACCCAGCAGTACAAGGTCGCCACCTCCAGGAAGAG
ATGAAAGCTACCCCCAAGAGCTCCCCAATTCTGTGTCTACATATCGACCGTTTGGTCTGGGCAGTGACTC
TCCCTACAAGCAGCCTTCTGGTGGAGTTGAGAGGCCGTCATCACTGATGGACTCTTCACAGGAAAAGCTC
TTCCCAGATACTTCCTTCCAGGAAGACGAGGACTACCGAGATTTTGAGTATTCAGGGCCTCCTCCATCTG
CCATGATGAATCTAGAGAAGAAACCAGCCAAATCCATCCTGAAGTCAAGCAAGCTTTCTGATGCCACTGA
GTACCAGCCAATCCTGTCTAGTTACAACCACAGGGCCCAAGAGTTTGGGGTCAAGTCTGCCTTCCCTCCA
TCTGTAAGGGCCCTCCTGGACTCTAGTGAGAACTGTGACCGTCTCTCATCTCCCCCTGGGCTATTTGGTG
CCTTCAACATAAGAGGGAATGAACCTGGGTCTGAGCGGTCACCATCACCAAGTAAAAATGATGCATTTTT
CACCCCTGACTCCAACCACAGTGGCTTGTCTCAGTCTACTGCTGGGCATCTCACGTTGCCACAGACACAA
TACCCAGACTCTCCTCACTCAGTCCCACATCGTTCCATTTTCTCTTCACAGAGTACCCTTGCCGCTCCAG
CAGGCCACCCACCCACATCAGGCGTGGAAAAAGTCCTGGCCTCCACGATTTCCACCACATCGACGATTGA
GTTTAAGAATATGCTTAAAAACGCCTCACGCAAGCCCTCAGATGATAAGCATTTTGGCCAGACACCCAAC
AAGGGTACTTCAAGTGATGGTGTCAGTCTCTCAAACCTCACCCAGCCCAGCTTGCCCACCACTGACCAAC
AACAGGAAGAACACTATCGAATAGAAACTCGTGTTTCCTCCTCCTGTTTAGACTTGCCTGACAGCACAGA
AGAAAAGGGGGCCCCTATAGAAACTCTAGGTTATCATAACGCAGCTAATAGGAGGATGTCAGGGGAGCCG
ATAAAGACTGTAGAGTCTATACGAGTTCCTGGGAAGGGAAATAGAGGACATGGGCGCGAGGTTTCAAGAG
TGGGTTGGTTTGATCTGAGCACACCAGGCAGCTCTTTTGACAATGGTCCCTCAAGTGCCTCTGAGTTGGC
ATCCCTTGGGGGTGGGGGCAGCGGAGGCCTCACTGGCTTTAAGACAACGCCGTACAAGGAACGGGCACCC
CAGTTTCAGGAGAGTGTCACCAGCTTTCGTTCCAACAGTTTCAACTCAACATTTGAGCATCATCTCCCCC
CATCCCCTTTGGAACATGGGGCACCCTTCCAGAGAGAGCCAGTGGGGCCGTCATCTGCCCCACCTGCCCC
TCCTAAGGATCATGGTGGTATCTTCTCTCGAGAGGCACCCACTCATCTGCCCTCTGTGGATCTTTCGAAC
CCCTTTACAAAGGAGGCATCTCTGGCCCACGCTGGCCCACCACCTCCTCCAGGAGAGCACAGCGGAGTTC
CTTTCCCTCCACCCCCCCCTCCTCCACCCCCGGGGGAACTTAGCAGTGGAGGGACTGGTGTCCCCTTTGC
TACTCCAGCCCCGCCTCCACCCCCTGTTGACCACTCTGGGGTTGTACCTTTCCCAACTCCACCACTGCCA
GAGCATGGAGTAACTGGGGCTGTGTCAGTTTTTCCCAAGGACCATAGTTCCCTCCTTCAAGGGACCATGG
CTGAGCATTTTGGGGTGCTCACAGGACCCAGGGACCTCAATGGCCCTGGTCTTAACCGTTCACGAGAGAG
CCTGAGCCTGCCTTCCCATCCTCTGGAGCACCTGGGCCCAGCCCTTGGAGGAGGTGGGGGAGGCAACACC
AGCAGCAGTGGCCTTCCCTTGAGTCCCGCACACAGAGACGCCATCGGCCGGAGTGGTATGATTTTACGGA
GTCCCCGGCCAGACTTTCGGCCTAGGGAAGCTTTTCTCGGCAGAGACCCATTCCACAGTTTAAAGAGACC
CAGGCCACCTTTTGTTAGAGGCCCTCCGTTCTTTGCACCAAAACGCCCATTCTTCCCTCCCAGGTACTGA

Translation (1469 aa):
MAAGGGGGSSKASSSSASSAGALESSLDRKFQSVTNTMESIQGLSSWCIENKKHHSTIVYHWMKWLRRST
YPHRLNLFYLANDVIQNCKRKNAIIFRESFADVLPEAAALVKDPSVSKSIERIFKIWEDRNVYPEDMIVA
LREALMDRAASHNARLQKLQCFPGTTFKTQKQLKENLNKQPNKQWKKSQTSTNPKAALKSKIVAEFRSQA
LIEELLMYKRSEDQIELKEKQLSTMRVDVCSTETLKCLKDKTGGKKFSKEFEEASSKLEEFVNGLDKQVK
NGPSLTEALENAGIFYEAQYKEVKVVANAYKTFANRVNNLKKKLDQLKSTLPDPEESPVPSPSMDAPSPT
GSESPFQGMGGEEPQSPAMESDKSATPEPVTDNRDVEDMELSDVEDDGSKIIVEDRKEKPVEKPAVSTGV
PTKSTESVSKASPCAPPSVPTTAAPPLPKPLSTALLSPSPTLVLPNLANVDLAKISSILSSLTSVMKNTG
VSSASRPSPGIPTSPSNLSSGLKTPAPATTPSHNPLANILSKVEITPESILSALSKTQTQSAPALQGLSS
LLQSVTANPVPASEVTSQSTTASPASTTGSAVKGRNLLSSTQSFIPKSFNYSPSSSTSEVSSTSASKASV
GQSPVLPSTTFKLPSSSLGFTGTHNPSPAAPPTEVAVCQSSEVSKPKPESESTSPSLEMKIHNFLKGNPG
FSGLNLNIPILSSLGSSAPSEGHASDFQRGPTSTSVDSIDGTPVRDERSGTPTQDEMMDKPTSSSVDTMS
LLSKIISPGSSTPSSTRSPPPGRDESYPQELPNSVSTYRPFGLGSDSPYKQPSGGVERPSSLMDSSQEKL
FPDTSFQEDEDYRDFEYSGPPPSAMMNLEKKPAKSILKSSKLSDATEYQPILSSYNHRAQEFGVKSAFPP
SVRALLDSSENCDRLSSPPGLFGAFNIRGNEPGSERSPSPSKNDAFFTPDSNHSGLSQSTAGHLTLPQTQ
YPDSPHSVPHRSIFSSQSTLAAPAGHPPTSGVEKVLASTISTTSTIEFKNMLKNASRKPSDDKHFGQTPN
KGTSSDGVSLSNLTQPSLPTTDQQQEEHYRIETRVSSSCLDLPDSTEEKGAPIETLGYHNAANRRMSGEP
IKTVESIRVPGKGNRGHGREVSRVGWFDLSTPGSSFDNGPSSASELASLGGGGSGGLTGFKTTPYKERAP
QFQESVTSFRSNSFNSTFEHHLPPSPLEHGAPFQREPVGPSSAPPAPPKDHGGIFSREAPTHLPSVDLSN
PFTKEASLAHAGPPPPPGEHSGVPFPPPPPPPPPGELSSGGTGVPFATPAPPPPPVDHSGVVPFPTPPLP
EHGVTGAVSVFPKDHSSLLQGTMAEHFGVLTGPRDLNGPGLNRSRESLSLPSHPLEHLGPALGGGGGGNT
SSSGLPLSPAHRDAIGRSGMILRSPRPDFRPREAFLGRDPFHSLKRPRPPFVRGPPFFAPKRPFFPPRY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH