NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS38765.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38765.1 Public Mus musculus 4 Elp1 23 108 98 CCDS HistoryNCBI Gene:230233Re-query CCDS DB by CCDS ID:38765.1Re-query CCDS DB by GeneID:230233See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38765.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030140.2 ENSMUSP00000030140.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030140.2Link to Ensembl Protein Viewer:ENSMUSP00000030140.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000030140Re-query CCDS DB by Protein ID:ENSMUSP00000030140
Original member Current member NCBI NM_026079.3 NP_080355.2 Accepted alive Link to Nucleotide Sequence:NM_026079.3Link to Protein Sequence:NP_080355.2Re-query CCDS DB by Nucleotide ID:NM_026079Re-query CCDS DB by Protein ID:NP_080355Link to BLAST:NP_080355.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080355.2 1333 Q7TT37 1333 100% 0 0

Chromosomal Locations for CCDS 38765.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 56751652 56751719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 56755304 56755379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 56757117 56757271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 56758213 56758340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 56758964 56759075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 56759801 56759914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 56762249 56762309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 56762841 56762903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 56767815 56767876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 56769014 56769215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 56770981 56771078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 56771433 56771556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 56772381 56772529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 56773016 56773101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 56773199 56773336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 56774522 56774601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 56774688 56774766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 56775017 56775090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 56775425 56775540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 56776690 56776795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 56776885 56776938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 56778959 56779062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 56779657 56779763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 56781026 56781217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 56784538 56784637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 56786588 56786752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 56787741 56787971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 56790131 56790224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 56790888 56791011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 56792027 56792117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 56792385 56792481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 56794090 56794175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 56795506 56795586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 56796504 56796585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 56798658 56798810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 56799975 56800124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4002 nt):
ATGAGAAATCTGAAGTTGCATCGGACCCTGGAGTTTCGGGACATTCAGGCACCAGGGAAACCTCAGTGTT
TCTGTCTGCGAGCTGAGCAGGGCACGGTGCTGATTGGCTCAGAACGTGGACTGACGGAAGTAGATCCTGT
GAGAAGAGAAGTGAAGACTGAAATTTCTTTGGTGGCAGAAGGTTTTCTTCCAGAGGATGGAAGTGGCTGC
ATTGTGGGTATTCAGGACTTGCTGGATCAGGAATCTGTGTGTGTGGCCACCGCCTCTGGGGACGTCATAG
TCTGCAATCTCAGCACACAGCAGCTGGAATGTGTTGGGAGTGTGGCCAGTGGTATCTCTGTCATGAGCTG
GAGTCCTGATCAAGAACTGCTGCTTCTTGCCACAGCTCAACAGACCCTGATTATGATGACAAAAGACTTT
GAAGTGATCGCAGAGGAGCAGATCCACCAGGATGATTTTGGAGAAGGCAAGTTTGTCACTGTTGGATGGG
GCAGTAAGCAGACCCAGTTCCACGGCTCAGAAGGCAGGCCAACAGCCTTTCCGGTGCAGTTGCCTGAGAA
TGCCTTGCCCTGGGACGACCGCAGACCACACATTACCTGGCGTGGGGATGGGCAGTATTTTGCTGTGAGT
GTTGTTTGTCGACAAACAGAGGCTCGGAAGATCCGCGTATGGAACCGAGAGTTTGCCTTGCAGTCAACCA
GTGAGTCTGTGCCAGGACTGGGGCCCGCCCTGGCTTGGAAACCCTCAGGCAGTTTGATTGCATCTACTCA
AGATAAACCCAACCAGCAAGATGTTGTGTTTTTTGAGAAAAATGGACTTCTTCATGGACATTTTACACTT
CCTTTCTTAAAAGATGAAGTTAAGGTAAATGACCTGCTGTGGAATGCAGATTCCTCGGTGCTTGCTATAT
GGCTAGAAGACCTCCCAAAGGAAGACAGTTCCACTCTGAAAAGCTATGTCCAGCTCTGGACCGTGGGGAA
CTATCACTGGTATCTGAAGCAAAGCCTGCCCTTCAGCACCACTGGGAAGAACCAGATCGTGTCTCTGCTG
TGGGACCCGGTGACGCCGTGTCGACTCCATGTTCTCTGTACGGGCTGGCGGTATCTATGCTGTGACTGGC
ACTGGACCACTGATCGGAGCTCTGGGAATAGTGCCAATGACTTGGCAAATGTGGCTGTTATTGATGGAAA
CAGGGTGTTGGTGACAGTCTTTCGGCAGACGGTCGTCCCACCTCCCATGTGTACCTACCGGCTGCTGATC
CCACATCCAGTGAATCAAGTCATATTCTCTGCTCACCTTGGGAATGACCTTGCTGTCCTCGACGCCAGTA
ACCAGATTTCTGTCTACAAGTGTGGTGATAAGCCAAACATGGATTCCACAGTGAAACTAGGAGCCGTGGG
TGGAAATGGATTTAAAGTTCCTCTTACAACACCTCATTTGGAAAAGAGATACTCGATTCAGTTCGGGAAC
AATGAAGAAGAAGAAGAAGAAGAAGTAAACGCACTGCAGTTGAGCTTTCTCACCTGGGTTGAAGACGACA
CTTTCCTGGCTATAAGCTACAGTCACTCCAGCTCACAGTCCATCATTCACCATTTGACTGTGACCCATTC
TGAGGTGGATGAGGAGCAAGGCCAGCTGGATGTCAGTTCGTCTGTGACAGTGGATGGAGTCGTCATTGGT
TTATGCTGCTGTTCTAAGACCAAGTCATTAGCAGTACAGCTGGCTGATGGCCAGGTGCTCAAGTACCTTT
GGGAGTCACCTTCTCTGGCTGTGGAACCCTGGAAGAATTCTGAAGGAATTCCTGTTCGATTTGTTCATCC
ATGCACACAGATGGAAGTAGCCACGATTGGAGGAGAGGAATGTGTCCTTGGTCTGACTGACAGGTGTCGC
TTTTTTATCAATGACACTGAGGTCGCATCAAATATCACGTCATTTGCTGTGTGTGATGACTTTCTACTGG
TGACAACCCATTCCCACACCTGCCAGGTTTTCTCCCTAAGTGGTGCCTCACTTAAAATGCTACAGGCAGC
TCTGAGTGGCAGTCATGAGGCCAGTGGAGAAATTCTGCGGAAAGTGGAAAGGGGTTCACGGATCGTGACA
GTTGTTCCCCAGGACACAAAGCTTATACTACAGATGCCAAGGGGAAACCTGGAGGTTGTTCATCATCGGG
CCTTGGTCTTGGCACAGATTCGGAAGTGGCTGGACAAACTTATGTTTAAAGAAGCATTTGAATGCATGAG
GAAACTGAGAATTAACCTCAATCTGATTCATGACCATAACCCCAAGGTCTTTCTCGAAAATGTGGAAACC
TTCGTAAAACAGATTGATTCTGTAAATCATATAAATTTGTTTTTCACAGAACTCAGGGAAGAAGATGTCA
CAAAGACCATGTACCCTCCCCCGATTACCAAGAGTGTCCAGGTGTCCACACATCCTGATGGGAAGAAACT
TGACCTCATCTGTGACGCCATGAGAGCAGCCATGGAGGCCATCAATCCTCGAAAGTTCTGCCTGTCGATA
CTCACATCTCATGTGAAGAAAACCACCCCGGAGCTGGAAATTGTGCTGCAGAAGGTACAGGAACTTCAAG
GAAATCTTCCCTTTGATCCTGAGAGTGTGAGTGTAGAGGAGGCTTTGAAATACCTGCTGCTCCTGGTGGA
TGTTAATGAGTTATTTAATCACTCCCTTGGGACCTATGACTTTAATTTAGTCCTCATGGTAGCTGAGAAG
TCACAAAAGGATCCTAAAGAATATCTTCCATTTCTGAATACACTTAAGAAAATGGAAACTAATTACCAGA
GGTTCACCATAGACAAGTACTTGAAACGATATGAAAAGGCCCTTGGACACCTCAGCAAGTGTGGACCTGA
GTATTTCACAGAATGCTTAAATTTGATAAAAGATAAAAACTTGTATAAAGAAGCTCTCAAGTTATATCGT
CCAGACTCACCACAGTACCAGGCGGTCAGCATGGCTTATGGCGAGCACCTGATGCAGGAGCACCTGTACG
AGCCAGCAGGGCTGGTGTTTGCCCGCTGTGGGGCCCAGGAGAAGGCACTTGAAGCATTTTTGGCTTGTGG
CAGCTGGCAGCAAGCCCTCTGTGTGGCTGCCCAGCTTCAGATGTCCAAAGACAAGGTGGCTGGCCTTGCT
AGAACTCTGGCAGGAAAGCTGGTGGAGCAGAGGAAGCACAGTGAGGCAGCCACAGTCCTGGAACAGTACG
CCCAGGATTATGAAGAGGCTGTGCTCCTGCTGCTAGAAGGATCTGCCTGGGAAGAAGCTCTGAGGCTGGT
CTACAAGTATGACAGAGTGGATATTATAGAAACCAGTGTAAAGCCTTCCATTTTAGAAGCCCAAAAAAAT
TACATGGACTTTCTGGACTCTGAGACAGCCACATTCATTCGCCATAAAAACCGCTTGCAGGTGGTTCGAG
CGCTCAGGAGGCAAGCACCACAGGTCCATGTGGATCACGAGGTGGCCCATGGCCCAGAGTCAGACCTCTT
CTCGGAAACCAGCAGTATTATGAGTGGCAGTGAGATGAGTGGCAGATACTCCCACAGTAACTCCAGGATA
TCTGCGAGGTCATCTAAAAACCGTCGGAAGGCAGAGCGCAAGAAGCATAGCCTCAAAGAAGGGAGTCCTC
TGGAGGGCCTGGCTCTTCTGGAGGCGCTGAGTGAAGTGGTACAAAGTGTTGAGAAGCTAAAAGATGAGGT
GCGTGCTATTTTGAAGGTGCTCTTTCTCTTTGAGTTTGAAGAGCAAGCAAAGGAGTTACAGAGAGCCTTT
GAGAGTACTCTGCAGCTGATGGAGAGGGCAGTTCCAGAGATCTGGACTCCTGCCGGCCAACAGAGTTCAA
CCACACCGGTCCTAGGTCCCAGCTCCACTGCGAATAGCATCACAGCCTCTTACCAGCAGCAGAAGACTTG
TGTCCCTGCTCTCGATGCTGGGGTTTATATGCCACCGAAGATGGACCCGAGAAGCCAGTGGAAGCTGAGC
CTGCTGGAATGA

Translation (1333 aa):
MRNLKLHRTLEFRDIQAPGKPQCFCLRAEQGTVLIGSERGLTEVDPVRREVKTEISLVAEGFLPEDGSGC
IVGIQDLLDQESVCVATASGDVIVCNLSTQQLECVGSVASGISVMSWSPDQELLLLATAQQTLIMMTKDF
EVIAEEQIHQDDFGEGKFVTVGWGSKQTQFHGSEGRPTAFPVQLPENALPWDDRRPHITWRGDGQYFAVS
VVCRQTEARKIRVWNREFALQSTSESVPGLGPALAWKPSGSLIASTQDKPNQQDVVFFEKNGLLHGHFTL
PFLKDEVKVNDLLWNADSSVLAIWLEDLPKEDSSTLKSYVQLWTVGNYHWYLKQSLPFSTTGKNQIVSLL
WDPVTPCRLHVLCTGWRYLCCDWHWTTDRSSGNSANDLANVAVIDGNRVLVTVFRQTVVPPPMCTYRLLI
PHPVNQVIFSAHLGNDLAVLDASNQISVYKCGDKPNMDSTVKLGAVGGNGFKVPLTTPHLEKRYSIQFGN
NEEEEEEEVNALQLSFLTWVEDDTFLAISYSHSSSQSIIHHLTVTHSEVDEEQGQLDVSSSVTVDGVVIG
LCCCSKTKSLAVQLADGQVLKYLWESPSLAVEPWKNSEGIPVRFVHPCTQMEVATIGGEECVLGLTDRCR
FFINDTEVASNITSFAVCDDFLLVTTHSHTCQVFSLSGASLKMLQAALSGSHEASGEILRKVERGSRIVT
VVPQDTKLILQMPRGNLEVVHHRALVLAQIRKWLDKLMFKEAFECMRKLRINLNLIHDHNPKVFLENVET
FVKQIDSVNHINLFFTELREEDVTKTMYPPPITKSVQVSTHPDGKKLDLICDAMRAAMEAINPRKFCLSI
LTSHVKKTTPELEIVLQKVQELQGNLPFDPESVSVEEALKYLLLLVDVNELFNHSLGTYDFNLVLMVAEK
SQKDPKEYLPFLNTLKKMETNYQRFTIDKYLKRYEKALGHLSKCGPEYFTECLNLIKDKNLYKEALKLYR
PDSPQYQAVSMAYGEHLMQEHLYEPAGLVFARCGAQEKALEAFLACGSWQQALCVAAQLQMSKDKVAGLA
RTLAGKLVEQRKHSEAATVLEQYAQDYEEAVLLLLEGSAWEEALRLVYKYDRVDIIETSVKPSILEAQKN
YMDFLDSETATFIRHKNRLQVVRALRRQAPQVHVDHEVAHGPESDLFSETSSIMSGSEMSGRYSHSNSRI
SARSSKNRRKAERKKHSLKEGSPLEGLALLEALSEVVQSVEKLKDEVRAILKVLFLFEFEEQAKELQRAF
ESTLQLMERAVPEIWTPAGQQSSTTPVLGPSSTANSITASYQQQKTCVPALDAGVYMPPKMDPRSQWKLS
LLE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH