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Report for CCDS38879.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38879.1 Public Mus musculus 4 Oscp1 23 108 98 CCDS HistoryNCBI Gene:230751Re-query CCDS DB by CCDS ID:38879.1Re-query CCDS DB by GeneID:230751See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38879.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035497.4 ENSMUSP00000045241.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035497.4Link to Ensembl Protein Viewer:ENSMUSP00000045241.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000035497Re-query CCDS DB by Protein ID:ENSMUSP00000045241
Original member Current member NCBI NM_172701.3 NP_766289.2 Accepted alive Link to Nucleotide Sequence:NM_172701.3Link to Protein Sequence:NP_766289.2Re-query CCDS DB by Nucleotide ID:NM_172701Re-query CCDS DB by Protein ID:NP_766289Link to BLAST:NP_766289.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766289.2 379 Q8BHW2 379 100% 0 0

Chromosomal Locations for CCDS 38879.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 126058681 126058792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126073805 126073959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126076717 126076884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126077336 126077416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126082882 126082985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126083596 126083724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126084393 126084462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126086543 126086682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126087706 126087769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126088322 126088438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1140 nt):
ATGTCGGTTCGGACTCTGCCGCTGCTCTTTTTGAACTTGGGCGGGGAGATGCTTTACGTCCTAGACCAGC
GACTGAGGGCCCAGAACATCCCCGGAGACAAGGCCCGCAAAGTTCTGAACGACATCATTTCAACCATGTT
CAACAGGAAGTTCATGGACGAACTGTTCAAACCCCAGGAGCTGTACTCCAAGAAGGCCTTGCGGACTGTG
TATGACCGCCTGGCTCATGCCTCCATCATGCGACTGAACCAGGCCAGCATGGATAAGCTCTACGACCTGA
TGACCATGGCTTTCAAATATCAAGTGCTGCTGTGTCCACGCCCCAAGGACGTGTTGCTGGTCACTTTCAA
CCACTTAGACGCCATCAAGGGTTTTGTCCAAGACTCTCCCACCGTCATACATCAGGTGGACGAGACCTTC
CGGCAGCTGTCAGAAGTGTATGGGAAGCTCTCTGAAGGGGAGTTCCAGCTGATCCGGCAGACACTGCTCA
ACTTCTTCCAAGACCTGCATATCCGAGTGTCCACATTTCTAAAGGACAAAGTTCAGAACTCTAATGGTCG
CTTTGTGTTGCCAGTGTCGGGGCCTGTTCCCTGGGGAACTGAAGTTCCTGGAGTCATTAGAGTGTTCAGT
GTCAAAGGCAAAGAGGTGAAGAAGATGAAATTCCGGCATGGCGGAGACTATGTTGCTGCCCAGAAGGAAG
GTTCTTTTGAGCTTTATGGAGACCGAGTCTTGAAACTGGGAACTAACATGTACAGTGCGAGTCGTCCTGT
GGAAACCCACATGTCTGCAACATCCAAGAACGCAGCCTCCAGGGCACAGGAAAACATTGTTCCAAACCCT
CTTGCCAAAGAAGAGCTGAATTTCTTGGCCAGGCTAATGGGAGGGATGGAGATCAAGAAGCCGAGTGGCC
CTGAACCAGGATTCCGACTGAATCTGTTTACGACCGATGAGGAAGAGGAACACGCAGCACTGTCCAGGCC
GGAGGAGTTGTCCTATGAAGTCATCAGCATACAGGCTACACAGGACCAGCAACGGAATGAGGAGTTGGCC
CGGATCATGGGTGAGTTTGAGATCACAGAGCAGCTGGAGCAGAACACCAGTAAGGGAGACGACTTGCTGG
CCATGATGGACAGGTTATAG

Translation (379 aa):
MSVRTLPLLFLNLGGEMLYVLDQRLRAQNIPGDKARKVLNDIISTMFNRKFMDELFKPQELYSKKALRTV
YDRLAHASIMRLNQASMDKLYDLMTMAFKYQVLLCPRPKDVLLVTFNHLDAIKGFVQDSPTVIHQVDETF
RQLSEVYGKLSEGEFQLIRQTLLNFFQDLHIRVSTFLKDKVQNSNGRFVLPVSGPVPWGTEVPGVIRVFS
VKGKEVKKMKFRHGGDYVAAQKEGSFELYGDRVLKLGTNMYSASRPVETHMSATSKNAASRAQENIVPNP
LAKEELNFLARLMGGMEIKKPSGPEPGFRLNLFTTDEEEEHAALSRPEELSYEVISIQATQDQQRNEELA
RIMGEFEITEQLEQNTSKGDDLLAMMDRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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