NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS38903.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38903.1 Public Mus musculus 4 Slc9a1 23 108 98 CCDS HistoryNCBI Gene:20544Re-query CCDS DB by CCDS ID:38903.1Re-query CCDS DB by GeneID:20544See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38903.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030669.7 ENSMUSP00000030669.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030669.7Link to Ensembl Protein Viewer:ENSMUSP00000030669.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000030669Re-query CCDS DB by Protein ID:ENSMUSP00000030669
Original member Current member NCBI NM_016981.3 NP_058677.1 Accepted alive Link to Nucleotide Sequence:NM_016981.3Link to Protein Sequence:NP_058677.1Re-query CCDS DB by Nucleotide ID:NM_016981Re-query CCDS DB by Protein ID:NP_058677Link to BLAST:NP_058677.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_058677.1 820 Q61165 820 100% 0 0

Chromosomal Locations for CCDS 38903.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 133370544 133370907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133411837 133412297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133415301 133415551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133416281 133416498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133417900 133418102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133419454 133419543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133419925 133419995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133420102 133420275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133420505 133420619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133420786 133420887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133421502 133421574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133421987 133422327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2463 nt):
ATGATGCTTCGGTGGTCCGGCGTCTGGGGATTTCATCCACCTCGGATCTTCCCCTCCTTGCTGGTGGTGG
TTGCCTTGGTGGGACTGCTACCTGTTCTCAGGAGCCACGGCCTCCAGCACAGCCCTACTGCCAGCACCAT
CAGAGGTTCTGAACCACCCCGGGAACGCTCAATTGGGGATGTCACCACGGCACCATCAGAGCCTCTCCAT
CGCCCAGATGACCACAATTTGACCAACTTAATCATTGAACATGGCGGTAAGCCATCTCGGAAGGCCTTCC
CAGTCCTGGACATTGACTACCCTCACGTGCGCACACCCTTTGAGATCTCCCTCTGGATTCTCCTGGCCTG
CCTCATGAAGATAGGTTTCCATGTGATCCCCACCATCTCAAGCATCGTCCCGGAGAGCTGCCTGCTGATC
GTAGTGGGGCTGCTGGTGGGGGGCCTGATCAAGGGCGTCGGAGAGACGCCCCCCTTCCTGCAATCAGACG
TCTTCTTCCTCTTCCTGCTGCCACCCATCATCCTGGATGCAGGCTACTTCCTGCCTCTGCGGCAGTTCAC
GGAGAACCTGGGCACCATCCTGATCTTTGCTGTGGTGGGCACACTGTGGAATGCGTTCTTCCTGGGTGGC
CTCCTGTACGCCGTGTGCCTGGTGGGCGGCGAGCAGATCAACAACATTGGCCTGCTGGACACCCTGCTCT
TTGGCAGCATCATCTCTGCCGTGGACCCTGTGGCTGTGCTGGCCGTCTTCGAGGAGATCCACATCAACGA
ACTGCTACACATCCTTGTCTTCGGGGAGTCCCTGCTCAACGATGCCGTCACTGTGGTCCTCTATCACCTC
TTTGAGGAATTTGCCAGCTATGACTCTGTGGGCATCTCGGACATCTTCCTCGGCTTCCTGAGCTTCTTCG
TGGTGGCCCTCGGTGGGGTGTTTGTGGGCGTGGTCTACGGGGTAATCGCAGCTTTCACCTCCCGATTTAC
CTCTCACATCCGGGTCATCGAGCCGCTCTTCGTCTTCCTCTACAGCTACATGGCTTACCTGTCAGCTGAG
CTCTTCCACCTGTCCGGAATCATGGCCCTCATCGCCTCAGGAGTAGTGATGCGCCCCTATGTGGAGGCCA
ACATCTCCCACAAATCCCACACCACCATCAAGTACTTCCTGAAGATGTGGAGCAGCGTCAGTGAGACCCT
CATCTTCATCTTCCTCGGCGTCTCCACTGTGGCCGGCTCCCACCAGTGGAACTGGACCTTCGTCATCAGC
ACCCTGCTCTTCTGCCTCATCGCCCGGGTGCTGGGTGTCCTGGTCCTGACCTGGTTCATCAACAAGTTCC
GCATTGTCAAGCTGACCCCCAAGGACCAGTTCATCATTGCCTATGGGGGCCTGCGAGGGGCCATCGCCTT
CTCGCTGGGCTACCTCCTGGACAAGAAGCACTTCCCCATGTGTGACCTGTTCCTCACCGCCATCATCACC
GTCATCTTTTTCACCGTCTTTGTGCAGGGCATGACCATTCGGCCCCTGGTCGACCTGTTGGCCGTGAAGA
AAAAGCAAGAAACAAAGCGCTCCATCAACGAGGAGATCCACACACAGTTCCTGGACCACCTTCTGACAGG
CATCGAGGACATCTGTGGTCATTATGGCCACCATCACTGGAAGGACAAGCTCAACCGTTTTAATAAGAAG
TATGTGAAGAAGTGCCTGATAGCAGGAGAGCGCTCCAAAGAGCCCCAGCTCATTGCCTTCTACCACAAGA
TGGAGATGAAGCAGGCCATTGAGCTGGTGGAGAGCGGAGGCATGGGCAAGATCCCATCTGCTGTCTCCAC
TGTCTCTATGCAGAACATCCACCCCAAGGCTGTGACTTCAGACCGCATCTTGCCAGCACTGTCCAAGGAC
AAGGAGGAAGAGATCCGCAAAATCTTGAGGAGCAATCTGCAGAAAACCCGGCAACGGCTGCGGTCCTATA
ACAGACACACGCTGGTGGCCGACCCCTACGAGGAAGCCTGGAACCAGATGCTGCTCCGGAGGCAGAAGGC
CCGGCAGCTGGAGCAGAAGATCACCAACTACCTGACAGTACCGGCCCACAAGCTGGACTCGCCCACCCTG
TCTCGGGCCCGCATAGGCTCAGACCCACTGGCCTATGAACCCAAGGCAGACCTGCCTGTCATCACCATTG
ACCCGGCCTCCCCACAGTCCCCTGAGTCTGTGGACCTGGTGAACGAGGAGTTGAAGGGCAAGGTCCTAGG
GCTAAACCGGGGTCCCAGGGTGACTCCGGAGGAGGAGGAGGAAGATGAGGACGGCATCATCATGATTCGG
AGCAAGGAGCCCTCATCCCCAGGCACCGACGACGTCTTCACCCCTGGATCAAGTGACAGCCCCAGCTCCC
AGAGAATACAACGCTGCCTCAGTGACCCAGGCCCCCACCCTGAGCCTGGGGAGGGAGAGCCTTTCATCCC
CAAAGGACAGTAG

Translation (820 aa):
MMLRWSGVWGFHPPRIFPSLLVVVALVGLLPVLRSHGLQHSPTASTIRGSEPPRERSIGDVTTAPSEPLH
RPDDHNLTNLIIEHGGKPSRKAFPVLDIDYPHVRTPFEISLWILLACLMKIGFHVIPTISSIVPESCLLI
VVGLLVGGLIKGVGETPPFLQSDVFFLFLLPPIILDAGYFLPLRQFTENLGTILIFAVVGTLWNAFFLGG
LLYAVCLVGGEQINNIGLLDTLLFGSIISAVDPVAVLAVFEEIHINELLHILVFGESLLNDAVTVVLYHL
FEEFASYDSVGISDIFLGFLSFFVVALGGVFVGVVYGVIAAFTSRFTSHIRVIEPLFVFLYSYMAYLSAE
LFHLSGIMALIASGVVMRPYVEANISHKSHTTIKYFLKMWSSVSETLIFIFLGVSTVAGSHQWNWTFVIS
TLLFCLIARVLGVLVLTWFINKFRIVKLTPKDQFIIAYGGLRGAIAFSLGYLLDKKHFPMCDLFLTAIIT
VIFFTVFVQGMTIRPLVDLLAVKKKQETKRSINEEIHTQFLDHLLTGIEDICGHYGHHHWKDKLNRFNKK
YVKKCLIAGERSKEPQLIAFYHKMEMKQAIELVESGGMGKIPSAVSTVSMQNIHPKAVTSDRILPALSKD
KEEEIRKILRSNLQKTRQRLRSYNRHTLVADPYEEAWNQMLLRRQKARQLEQKITNYLTVPAHKLDSPTL
SRARIGSDPLAYEPKADLPVITIDPASPQSPESVDLVNEELKGKVLGLNRGPRVTPEEEEEDEDGIIMIR
SKEPSSPGTDDVFTPGSSDSPSSQRIQRCLSDPGPHPEPGEGEPFIPKGQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH