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Report for CCDS39610.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39610.1 Public Mus musculus 6 Dcp1b 23 108 98 CCDS HistoryNCBI Gene:319618Re-query CCDS DB by CCDS ID:39610.1Re-query CCDS DB by GeneID:319618See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39610.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112777.8 ENSMUSP00000108397.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112777.8Link to Ensembl Protein Viewer:ENSMUSP00000108397.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000112777Re-query CCDS DB by Protein ID:ENSMUSP00000108397
Original member Current member NCBI NM_001033379.3 NP_001028551.2 Accepted alive Link to Nucleotide Sequence:NM_001033379.3Link to Protein Sequence:NP_001028551.2Re-query CCDS DB by Nucleotide ID:NM_001033379Re-query CCDS DB by Protein ID:NP_001028551Link to BLAST:NP_001028551.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028551.2 578 Q3U564-1 578 99.827% 0 1

Chromosomal Locations for CCDS 39610.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 119175293 119175442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 119180065 119180105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 119183650 119183777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 119198928 119198994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 119200822 119200951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 119206470 119206598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 119214770 119215606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 119217803 119217979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 119220003 119220080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1737 nt):
ATGGCGGCCGCGGCGGCAGGTGGCCTGCCTGGGAAGGGACACGATATCAGCCTGGCAGCCCTGCGGCGCC
ACGACCCCTACATCAGTCGCATCGTGGACGTGGCCAGCCAGGTGGCTCTGTACACTTTCGGCCATCGGGC
CAACGAGTGGGAGAAGACTGGAGTGGAGGGAACCTTGTTTGTTTATACGAGGTCTGCCTCCCCAAAGCAC
GGATTCACCATTATGAATAGGCTCAGCATGGAAAACAGAACAGAACCCATTACTAAAGACCTGGACTTCC
AGCTCCAGAACCCTTTCCTTCTCTACAGAAACGGCACACTGTCCATTTATGGAATTTGGTTTTATGATAA
GGAAGAGTGCCAGAGAATTGCAAAACTAATGAAAAACCTCACTCAGAGCGAACAGTTGAAAGCCTGTCAT
GGAGCCGGATCCTCCCCCGTGACCTTGAGCTCAGGAGAGGGCCAAGAAGTAGATATCCTGCAGATGCTCA
CCAAGGCCAAGGATGAGTACACCAAGTGTAAGACCTGTTCCGAGCCAAAACAGATGACCAATTCCTCTGC
CATCTGTGACAACCCTAAACTTATCAAACCTGTCCCCGTGAGACCCAGCAGCAGCCAGAGGCTGCAAGGA
CCTGCGCCCAGCAAGACCTCGGACCCTGAGCCTCAGCACTTATCTTTAACAGCACTATTTGGGAAACAAG
ACAAAGCTCCCTGTCAGGAAACTGTAAAGCCCTCCCGGACCTTTGCCCACCACCACCACCATCACCACCA
GCAGCAGCAAGAGACGCGTCCAGTTCATCACGGGGTCGCATGCTCCCTGTCCTGTGAGGAGCCCAGGAAG
CTCTCACTCCCGGTGGAGAAGCAGCTCTGCCCGGCCATTCAGAAACTCATGCTCGGGAGCCCGGGGCTGC
ACCCCCTGCCTCAGCACCCTGAACAGTGGTCCTGCAAAAGTGGCAGCCCCAGTCCTGCCGGGGGAATTCT
CCCTGGTCCTGTCCAGCTGGGGTCCCCCTGGAATGGCAGGGTTGCACACTGCACACAGAGCACTTGCAGA
GGCCACAAGCTATTAGAGCAGCTTCAAGGTGCCCCTGGGGCAGTGCATAAGTATAACCCCTGTGCGCCTA
CCGGTCCAGCTGTGGCCACTCAGGTGGCTCCGGGCCAGAGTGTGGCCCAATCACAGCTGGTGTATTTCAG
TGGCCCCCTTCAACCTCCCGCCCCAGGACACCAAGCTCTCAGGAAGGAGCAGGGTGCACTGCCTGCACAA
GCGGTGTCCCTCTCTGGCAGCCAGGAGAGCAGCCCCACCGTGCTCCCTACGCAGGAGCTGCTAAGGAAGC
TCCAGGTAGTACACCAGGAGCAGCAGGCGGCCCCCCGGCCAGCCTTGGCAGCCAGGTTCCCTGTGTCAGC
CCAGGGATCAGGGACAGAAAAGCCCTTGGAAGCCTGGGTCAGCAAGACAGCCAGCATGGAGAAGCAGGCT
CCTCTTCTGCAGTCTACCTGTGCCCCACTGAGGGAGACTGATAATGGGCTCATGGCCCTAGGAGGCCAAG
AACTTCCTGCTGCCTCCTCCAGCCTCCTCCTGCCCCTGCAGAACTGGGAGTCCTCCACCGTGGCCAGCAG
GCCCCTCACCAGGCTGCAGCTCCAGGAGGCACTGCTGAACCTCATCCAGAATGATGACAACTTCTTAAGC
ATAATCTATGAAGCCTATCTCTTCAGCGTGACACAAGCAGCCATGAGAACCACGTAA

Translation (578 aa):
MAAAAAGGLPGKGHDISLAALRRHDPYISRIVDVASQVALYTFGHRANEWEKTGVEGTLFVYTRSASPKH
GFTIMNRLSMENRTEPITKDLDFQLQNPFLLYRNGTLSIYGIWFYDKEECQRIAKLMKNLTQSEQLKACH
GAGSSPVTLSSGEGQEVDILQMLTKAKDEYTKCKTCSEPKQMTNSSAICDNPKLIKPVPVRPSSSQRLQG
PAPSKTSDPEPQHLSLTALFGKQDKAPCQETVKPSRTFAHHHHHHHQQQQETRPVHHGVACSLSCEEPRK
LSLPVEKQLCPAIQKLMLGSPGLHPLPQHPEQWSCKSGSPSPAGGILPGPVQLGSPWNGRVAHCTQSTCR
GHKLLEQLQGAPGAVHKYNPCAPTGPAVATQVAPGQSVAQSQLVYFSGPLQPPAPGHQALRKEQGALPAQ
AVSLSGSQESSPTVLPTQELLRKLQVVHQEQQAAPRPALAARFPVSAQGSGTEKPLEAWVSKTASMEKQA
PLLQSTCAPLRETDNGLMALGGQELPAASSSLLLPLQNWESSTVASRPLTRLQLQEALLNLIQNDDNFLS
IIYEAYLFSVTQAAMRTT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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