NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS39636.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39636.1 Public Mus musculus 6 Ncapd2 23 108 98 CCDS HistoryNCBI Gene:68298Re-query CCDS DB by CCDS ID:39636.1Re-query CCDS DB by GeneID:68298See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39636.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043848.10 ENSMUSP00000042260.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043848.10Link to Ensembl Protein Viewer:ENSMUSP00000042260.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000043848Re-query CCDS DB by Protein ID:ENSMUSP00000042260
Original member NCBI NM_146171.1 NP_666283.1 Updated not alive Link to Nucleotide Sequence:NM_146171.1Link to Protein Sequence:NP_666283.1Re-query CCDS DB by Nucleotide ID:NM_146171Re-query CCDS DB by Protein ID:NP_666283
Current member NCBI NM_146171.2 NP_666283.1 Accepted alive Link to Nucleotide Sequence:NM_146171.2Link to Protein Sequence:NP_666283.1Re-query CCDS DB by Nucleotide ID:NM_146171Re-query CCDS DB by Protein ID:NP_666283Link to BLAST:NP_666283.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666283.1 1392 Q8K2Z4-1 1392 99.8563% 0 2

Chromosomal Locations for CCDS 39636.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 125168234 125168319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125168590 125168748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125168863 125168989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125169815 125169998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125170134 125170214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125170727 125170821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125170916 125171093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125171398 125171553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125171636 125171759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125171833 125171947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125172990 125173162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125173360 125173524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125173601 125173685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125173780 125173912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125174225 125174358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125176143 125176227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125176652 125176826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125177328 125177552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125177809 125177924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125179238 125179412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125179513 125179600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125179695 125179829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125180979 125181176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125183914 125184061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125184229 125184352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125184435 125184562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125185694 125185836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125186100 125186281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125186754 125186812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125187077 125187152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125189763 125189889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4179 nt):
ATGTCTCCCCACAACTTTGAATTCCACTTGCCCTTATCTCCAGAGGAGCTGCTGAAAAGTGGAGGTGTGA
ATCAGTACGTTGTCCGGGAGGTGCTGCCCGTCAAGCACCTCTCATCCCAGCTTAGAGCATTTCAGTCTGC
CTTCCGAGCTCAGGGGCCCCTCGCCATACTGGAGCACTTCGATACAGTCTACAGCATTTTACATCACTTT
CGAAGTATAGAACCTGGCCTCAAGGAAGACACTCTGGAATTCCTGAAGAAAGTGGTATCCCGCCACTCCC
AGGAACTGTCGTCCATCCTGGATGATGCAGCTCTGAGTGGATCAGATAGAAGCGCCCACCTGAATGCCCT
CAAAATGAACTGCTATGCCCTGATACGCCTTTTGGAGTCCTTTGAGAATATGACCAGCCAGACAAGCCTC
ATTGACCTGGACATCGGTGGGAAGGGTAAGAGAGCCCGGGCCAAAGCAACCCTTGGCTTTGACTGGGAGG
AAGAGAGGCAACCAGTTCTTCAGCTTTTAACACAGCTGCTCCAGCTGGACATCCGTCACCTATGGAACCA
CTCAGCAATTGAAGAAGAATTTGTCAGTTTGGTTACTGGCTGTTGCTACCGCCTTTTGGAGAATCCCACC
ATTAGTCACCAGAAGAACCGCTCCACCAAGGAGGCCATAGCACACCTGCTTGGGGTGGCCTTGGTCCGCT
ACAACCATATGCTCAGTGCCACTGTGAAGATCATCCAGATGTTGCAGCACTTTGAGCACCTGCCCCCTGT
GTTGGTGACAGCCGTGAGTCTGTGGGCAACAGACTACGGGATGAAGAGCATAGTGGGAGAGATTGTAAGA
GAGATTGGACAGAAGTGTCCACAGGAGCTGAGTCGAGACACAGCAGGGGCAAAGGGCTTTGCGGCTTTCC
TCACTGAGCTAGCAGAGCGAATCCCAGCTGTCCTGATGGCCAACATGTGCATTCTGCTAGACCATCTGGA
TGGAGAGAATTACATGATGCGCAATGCTGTGTTAGCAGCTATAGCCGAGATGGTACTGCAGGTTCTAAAT
GGTGACCAGCTCGAAGAATCAGCTCGAGAAACCAGAGATCAGTTCTTGGACATCTTGCAAGCTCATGGCC
ATGATGTGAACTCTTTTGTTCGGAGCCGTGTTTTGCAGCTCTTTGCCCGAATTGTCCAACAGAAGGCACT
CCCTCTGACCCGTTTCCAGGCAGTGGTGGCCTTGGCAGTGGGACGGCTGGCAGACAAGTCAGTGCTAGTG
TGTAAAAATGCCATTCAGCTGCTGGCCAGCTTTCTAGCCAATAATCCCTTTTCCTGCAAGCTTAGTGATA
TTGACCTTGCTGGACCACTGCAGAAGGAGATTCAGAAATTACAAGAAATGCGAGCCCAGAGGCGAAGTGC
AGCAGCGACTGCAGCACTAGACCCGGAGGAGGAGTGGGATGCCATGTTGCCAGAATTGAAGTCGACCCTG
CAGCAGCTCCTGAAACTTCCCCAGGAAGAGGGAGATCATCAAATTGCTGATGCAGAGACTGCAGAGGAGG
TGAAAGGACGCATCCGCCAACTGCTTGCCAAAGCAAGTTACAAACAGGCTATTGTTCTCACTCGGGAAGC
TACCAGTCACTTCCAGGAGTCTGAACCCTTCAGTCACACAGAGCCAGAGGAGAACAGCTTCCTGAATCTC
TTGGGACTCATCTTCAAAGGCCCCGAAGCTTCCACACAGGGCTCTCATGGGGACACAGACCCAGGGCTGA
CAGGCAGTAAAGACTCTCCCAGTGTGCCCGAGCCAGAGGGATCCCAGAGCAACGATGAGCTGGTGAAGCA
GGAGATGCTGGTGCAGTATCTGCAGGATGCCTACGGCTTCTCCCAGAAGATTACAGAAGCCATTGGCATC
ATCAGCAAGATGATGTATGAGAACACAACTACAGTGGTGCAGGAGGTGATTGAGTTCTTCGTGATGGTAT
TCCAATTTGGGGTACCTCAGGCCCTGTTTGGGGTACGCCGCATGCTGCCACTCATCTGGTCTAAGGAGCC
TGGTGTCCGGGAAGCCGTGCTTAATGCGTACCGCCAACTCTACCTCAACCCGAAAGGGGACTCAGCCAGA
GCCAAGGCGCAGACTTTGATTCACAACCTCTCGCTGTTGTTAGTGGATGCCTCCGTCGGGACCATTCAGT
GTCTTGAGGAAATTCTTTGTGAGTTTGTGCAGAAGGATGAGGTAAAGCCAGCGGTGATCCAGCTGCTATG
GGAACGGGCAACGGAGAAGGTGCCAAGCTCTCCTCTGGAGCGCTGCTCCTCTGTTATGCTTCTTGGCATG
ATGGCACGAGGAAAACCAGAAATTGTAGGGAGCAACTTAGACGCCCTGGTGAGGGTGGGGCTGGATGAGA
AGTCTCCCCAGGACTACAGGCTGGCCCAGCAGGTGTGCCTTGCCATTGCTAACATCTCGGACAGGAGGAA
GCCTTCCCTGGGTGAGCGTCACCCTCCCTTCCGGCTGCCTCAGGAGCACAGGTTGTTTGAGCGACTTCAG
GATATGGTCACAAAGGGCTTTGCACACCCAGATCCCCTCTGGATCCCATTCAAAGAAGTAGCAGTGACCC
TGACCTACCAGTTGGCAGAGAGCCCTGATGTGCTCTGTGCCCAGATGTTGCAAGGCTGTGCCAAGCAAGT
CTTGGAGAAACTTGAGAAGAACGCCACTGAGGCAGACCCCAAGGAAACAGCCCCTAGGCTCCCCACATTC
CTGCTGATGAACCTGCTGTCCCTGGCTGGGGATGTGGCTCTACAGCAGCTGGTGCATTTGGAACAAGCAG
TGAGTGGAGAGCTGGGTCGGCGGCGAGTTCTGCGAGAGGAGCAGGAGCACAGGGCCAAGGAGCCCAAGGA
GAAGACTGCAAGCTCTGAAACTACAATGGAGGAAGAACTGGGGCTGGTGGGGGGGGCCACTGCTGACGAC
ACAGAGGCGGAGCTCATCCGAAGCATCTGTGAGAAGGAGCTGTTGGACGGCAACCAGGTACTAGCTGCCT
TTGTTCCACTGCTACTTAAAGTCTGTAACAACCCTGGCTTATACAGCAACCCAGAGCTCTGTGCGGCTGC
GTCGCTGGCCCTTGGCAAGTTCTGCATGATCAGTGCCCCTTTCTGCGACTCCCAGCTTCGTCTTCTATTC
ACCATGCTGGAAAAGTCTTCACTCCCCACTGTGCGATCTAACCTCATGGTTGCCACAGGGGATCTGGCTA
TCCGCTTCCCTAACCTGGTGGATCCCTGGACTCCTCATCTGTATGCCCGCCTCCGAGACCCAGCTCAACA
AGTGCGGAAGACAGCGGGGCTGGTGATGACGCACCTGATCCTGAAGGACATGGTGAAGGTGAAGGGGCAG
GTGAGCGAGATGGCCGTGCTGCTCATCGACCCTGTGCCTCAGATCGCTGCTCTGGCCAAGAATTTCTTCA
ATGAGCTCTCCCACAAGGGCAATGCTATCTATAATCTACTCCCCGATATCATCAGTCGCCTGTCAGACCC
AGAGGGCGGAGTGGAAGAGGAGCCCTTCCACACCATCATGAAGCAGCTCCTCTCCTACATCACCAAGGAC
AAACAGACTGAGAGCTTGGTAGAAAAGCTGTGTCAGCGGTTCCGCACAGCCCGAACTGAGCGTCAGTACC
GAGACCTAGCCTACTGTATGTCCCAGCTGCCCCTCACAGAGCGAGGTCTCCAGAAGATGCTAGACAACTT
TGAGTGCTTTGGCGATAAGCTCTTAGATGAGTCTGTCTTCAGTGCTTTCTTGTCAGTTGTGGGCAAACTG
CGTCGCGGGGCCAAGCCTGAGGGCAAGGCTATAATAGATGAATTTGAGCAGAAGCTTCGTGCCTGTCACA
CCAGAGGCATGGATGGAATAGAGGAGTTTGAAACTGGCCAGGGAGGCAGCCAGCGAGCCCTGTCTGCCAA
GAAACCCTCCGCTGTCTCAAGGCTACAGCCTCTGACTTCTGTAGACTCAGACAATGACTTTGTCACACCT
AAGCCGCGACGTACCAAACCTGGTCGTCCACAAACTCAGCAGCGCAAGAAGTCCCAGAGGAAAGCCAAAG
TTGTCTTCTTGAGTGACGAGTCCAGTGAGGACGAACTTTCAGCAGAGATGACAGAAGAAGAGACACCCAA
GAGAACCACCCCCATCCGCAGAGCATCTGGGCGAAGACACAGGTCCTAG

Translation (1392 aa):
MSPHNFEFHLPLSPEELLKSGGVNQYVVREVLPVKHLSSQLRAFQSAFRAQGPLAILEHFDTVYSILHHF
RSIEPGLKEDTLEFLKKVVSRHSQELSSILDDAALSGSDRSAHLNALKMNCYALIRLLESFENMTSQTSL
IDLDIGGKGKRARAKATLGFDWEEERQPVLQLLTQLLQLDIRHLWNHSAIEEEFVSLVTGCCYRLLENPT
ISHQKNRSTKEAIAHLLGVALVRYNHMLSATVKIIQMLQHFEHLPPVLVTAVSLWATDYGMKSIVGEIVR
EIGQKCPQELSRDTAGAKGFAAFLTELAERIPAVLMANMCILLDHLDGENYMMRNAVLAAIAEMVLQVLN
GDQLEESARETRDQFLDILQAHGHDVNSFVRSRVLQLFARIVQQKALPLTRFQAVVALAVGRLADKSVLV
CKNAIQLLASFLANNPFSCKLSDIDLAGPLQKEIQKLQEMRAQRRSAAATAALDPEEEWDAMLPELKSTL
QQLLKLPQEEGDHQIADAETAEEVKGRIRQLLAKASYKQAIVLTREATSHFQESEPFSHTEPEENSFLNL
LGLIFKGPEASTQGSHGDTDPGLTGSKDSPSVPEPEGSQSNDELVKQEMLVQYLQDAYGFSQKITEAIGI
ISKMMYENTTTVVQEVIEFFVMVFQFGVPQALFGVRRMLPLIWSKEPGVREAVLNAYRQLYLNPKGDSAR
AKAQTLIHNLSLLLVDASVGTIQCLEEILCEFVQKDEVKPAVIQLLWERATEKVPSSPLERCSSVMLLGM
MARGKPEIVGSNLDALVRVGLDEKSPQDYRLAQQVCLAIANISDRRKPSLGERHPPFRLPQEHRLFERLQ
DMVTKGFAHPDPLWIPFKEVAVTLTYQLAESPDVLCAQMLQGCAKQVLEKLEKNATEADPKETAPRLPTF
LLMNLLSLAGDVALQQLVHLEQAVSGELGRRRVLREEQEHRAKEPKEKTASSETTMEEELGLVGGATADD
TEAELIRSICEKELLDGNQVLAAFVPLLLKVCNNPGLYSNPELCAAASLALGKFCMISAPFCDSQLRLLF
TMLEKSSLPTVRSNLMVATGDLAIRFPNLVDPWTPHLYARLRDPAQQVRKTAGLVMTHLILKDMVKVKGQ
VSEMAVLLIDPVPQIAALAKNFFNELSHKGNAIYNLLPDIISRLSDPEGGVEEEPFHTIMKQLLSYITKD
KQTESLVEKLCQRFRTARTERQYRDLAYCMSQLPLTERGLQKMLDNFECFGDKLLDESVFSAFLSVVGKL
RRGAKPEGKAIIDEFEQKLRACHTRGMDGIEEFETGQGGSQRALSAKKPSAVSRLQPLTSVDSDNDFVTP
KPRRTKPGRPQTQQRKKSQRKAKVVFLSDESSEDELSAEMTEEETPKRTTPIRRASGRRHRS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH