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Report for CCDS39664.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39664.1 Public Mus musculus 6 Klra17 23 108 98 CCDS HistoryNCBI Gene:170733Re-query CCDS DB by CCDS ID:39664.1Re-query CCDS DB by GeneID:170733See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 39664.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000014687.10 ENSMUSP00000014687.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000014687.10Link to Ensembl Protein Viewer:ENSMUSP00000014687.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000014687Re-query CCDS DB by Protein ID:ENSMUSP00000014687
Original member Current member EBI ENSMUST00000122219.1 ENSMUSP00000114108.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000122219.1Link to Ensembl Protein Viewer:ENSMUSP00000114108.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000122219Re-query CCDS DB by Protein ID:ENSMUSP00000114108
Original member Current member NCBI NM_133203.5 NP_573466.3 Accepted alive Link to Nucleotide Sequence:NM_133203.5Link to Protein Sequence:NP_573466.3Re-query CCDS DB by Nucleotide ID:NM_133203Re-query CCDS DB by Protein ID:NP_573466Link to BLAST:NP_573466.3

Chromosomal Locations for CCDS 39664.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 129831447 129831600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 129865666 129865769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 129868686 129868828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 129872189 129872407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 129873284 129873373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 129874796 129874907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (822 nt):
ATGAGTGAGCAGGAGGTCACTTATTCAACTGTGAGATTTCATAAATCTTCAGGATTGCAGAACCAAGTGA
GGCCTGAGGACAATCAAGGGTCAAGAGAAGCTGGCCACAAAGAGTGCTCTATCCCCTGGCATCTCATTGT
GATAGCTTTTGGAATCCTCTGTGTCCTTCTTCTGGTAATTGTTGCAGTGTTGGTGACAAACATTTTGCAG
TATAAGCAAGAAAAACATGAACTGCAGGAAACTCTAAACTGCCACCATAACTGTAGCACCATGCAAAATG
ACATCAACGCAAAGGAAGAAATGCTGAGAAATATGCCTCTAGAGTGTAGTACAGGAGATGATCTTCTGAA
ATCCCTCAACAGAGAACAGAAGAGATGGTACAGTGAAACCAAGAGTGTTTTAAATTCCTCAAAGCACCCA
GGTGGAAGCCTGGAAATACACTGGTTCTGCTATGGTATAAAGTGTTATTATTTCATCATGAATAAAAAAG
GATGGCGTAAATGTAAACAGATATGTGAGCATTACAGCTTATCCCTTCTGAAGATAGATGCTGAGGATGA
ACTGAAATTCCTTCAGTTACAGGTTACTCCAGACAGTTACTGGATTGGCTTCTCATTTGATAAGAAAAGT
GAAAAATGGACATGGATTGAAAATGGCACATCTAAATATGCCTTGAACATGTCCACATACAATGTAAAGA
GTGGAGAATGTGTGTTCTTATCTAAAACAAGACTAGAAAATAATAAATGTGAACATGTCTACCCATGTAT
TTGTGAGAAGAGACTGGATAAGTTCCCTGATTCGCTCCCCAACAACAGTTAA

Translation (273 aa):
MSEQEVTYSTVRFHKSSGLQNQVRPEDNQGSREAGHKECSIPWHLIVIAFGILCVLLLVIVAVLVTNILQ
YKQEKHELQETLNCHHNCSTMQNDINAKEEMLRNMPLECSTGDDLLKSLNREQKRWYSETKSVLNSSKHP
GGSLEIHWFCYGIKCYYFIMNKKGWRKCKQICEHYSLSLLKIDAEDELKFLQLQVTPDSYWIGFSFDKKS
EKWTWIENGTSKYALNMSTYNVKSGECVFLSKTRLENNKCEHVYPCICEKRLDKFPDSLPNNS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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