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Report for CCDS39716.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39716.1 Public Mus musculus 6 Klhl42 23 108 98 CCDS HistoryNCBI Gene:232539Re-query CCDS DB by CCDS ID:39716.1Re-query CCDS DB by GeneID:232539See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39716.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000036003.7 ENSMUSP00000042558.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000036003.7Link to Ensembl Protein Viewer:ENSMUSP00000042558.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000036003Re-query CCDS DB by Protein ID:ENSMUSP00000042558
Original member NCBI NM_001081237.1 NP_001074706.1 Updated not alive Link to Nucleotide Sequence:NM_001081237.1Link to Protein Sequence:NP_001074706.1Re-query CCDS DB by Nucleotide ID:NM_001081237Re-query CCDS DB by Protein ID:NP_001074706
Current member NCBI NM_001081237.2 NP_001074706.1 Accepted alive Link to Nucleotide Sequence:NM_001081237.2Link to Protein Sequence:NP_001074706.1Re-query CCDS DB by Nucleotide ID:NM_001081237Re-query CCDS DB by Protein ID:NP_001074706Link to BLAST:NP_001074706.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074706.1 493 Q8BFQ9 493 100% 0 0

Chromosomal Locations for CCDS 39716.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 147091532 147092367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 147101566 147101759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 147107695 147108146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1482 nt):
ATGTCGGCCGAGGAGATGGTGCAGATCCGCCTGGAAGACCGCTGCTACCCGGTGAGCAAGAGCAAGCTGA
TCGAACAGAGCGACTACTTCCGCGCGCTCTACCGCTCCGGCATGCGCGAGGCCGTGCGGCCCGAGGTGGG
CCCGGAGGTGCAGCAGCTGCGCGGCCTGAGCGCTCCGGGCCTGCGGCTGGTGCTGGACTTCATCAACGCG
GGCGGCGCGCGCGAGGGCTGGGGCCTGAGCGAGGACGAGCTGGCCGAGGCTAGTGTGCTGTCCGAGATGG
TGGAGGCCGCGTCCTTTCTGCAGGTCACGGCGCTTCTGCGCTTGCTGCTGTCGCACGTGCGTCTGGGCAA
CTGCCTGGAGCTGTACCGCCTGGCGCAGGTGTACGGACTGCCCGACCTGCAGGACGCCTGCCTGCGCTTC
ATGGTGCTGCGCTTCCACCAGGTGCTGTGTCAGCCGCAATTCCCGCTACTGTTGTCGCCGCCGCAGGCCC
CCGGGGACTGCAGCCTGAAGCAGAGGCTGAGGGAGGCCCGCATGCGCGGGACCCCGGTCCTGGTGGCCCT
GGGGGACTTCCTCGGGGGACCCCTTGCCCCGCACCCGTATCAGGGGGAACCCCCGTCCATGCTTAGGTAC
GAGGAGACCACGGAGCGCTGGTTCCCCCTGGCCAACAACCTGCCCCCCGACCTGGTGAACGTCAGGGGCT
ACGGCTCAGCCATTTTGGACAACTACCTCTTCATCGTGGGTGGTTACAGGATCACCAGCCAGGAGATCTC
TGCCGCACACTCCTACAATCCCATCACCAACGAGTGGCTGCAGGTGGCCTCCATGAACCAGAAGCGATCT
AACTTCAAACTTGTGGCTGTCAATTCAAAGCTTTACGCCATCGGTGGGCAGGCTGTTTCTAACGTGGAAT
GCTACAATCCCGAGCAAGATGCGTGGAATTTTGTGGCTCCCCTGCCAAACCCTCTGGCTGAGTTCTCTGC
CTGCGAGTGCAAGGGGAAGATTTACGTCATTGGCGGATATACCACCCGAGATCGCAACATGAACATCCTG
CAGTACTGCCCCTCCGCCGACCTCTGGACGCTGTTTGAGACCTGTGACGTCCATATCCGCAAGCAGCAGA
TGGTGTCCGTGGAGGAGACCATCTACATCGTGGGTGGGTGTCTCCATGAACTGGGGCCCAACCGCAGGAG
CAGCCAGAGTGAGGACATGCTCACCGTGCAGTCCTACAACACAGTCACGCGTCAGTGGCTCTACCTGAAG
GAGAACACGTCCAAATCGGGCCTGAACTTGACATGCGCACTGCACAATGACGGCATCTACATTATGAGCA
GGGACGTCACCCTGTCCACCAGCTTGGAGCACCGAGTGTTTCTCAAGTACAACATCTTTGCTGACAGCTG
GGAAGCCTTCCGGCGGTTCCCAGCTTTCGGACATAACTTGTTGATTTCCTCTCTCTATCTGCCCAATAAA
GCAGAGACCTGA

Translation (493 aa):
MSAEEMVQIRLEDRCYPVSKSKLIEQSDYFRALYRSGMREAVRPEVGPEVQQLRGLSAPGLRLVLDFINA
GGAREGWGLSEDELAEASVLSEMVEAASFLQVTALLRLLLSHVRLGNCLELYRLAQVYGLPDLQDACLRF
MVLRFHQVLCQPQFPLLLSPPQAPGDCSLKQRLREARMRGTPVLVALGDFLGGPLAPHPYQGEPPSMLRY
EETTERWFPLANNLPPDLVNVRGYGSAILDNYLFIVGGYRITSQEISAAHSYNPITNEWLQVASMNQKRS
NFKLVAVNSKLYAIGGQAVSNVECYNPEQDAWNFVAPLPNPLAEFSACECKGKIYVIGGYTTRDRNMNIL
QYCPSADLWTLFETCDVHIRKQQMVSVEETIYIVGGCLHELGPNRRSSQSEDMLTVQSYNTVTRQWLYLK
ENTSKSGLNLTCALHNDGIYIMSRDVTLSTSLEHRVFLKYNIFADSWEAFRRFPAFGHNLLISSLYLPNK
AET


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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