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Report for CCDS39845.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39845.1 Public Mus musculus 7 Nlrp9a 23 108 98 CCDS HistoryNCBI Gene:233001Re-query CCDS DB by CCDS ID:39845.1Re-query CCDS DB by GeneID:233001See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39845.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000071780.9 ENSMUSP00000071685.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000071780.9Link to Ensembl Protein Viewer:ENSMUSP00000071685.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000071780Re-query CCDS DB by Protein ID:ENSMUSP00000071685
Original member Current member EBI ENSMUST00000122040.6 ENSMUSP00000113318.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000122040.6Link to Ensembl Protein Viewer:ENSMUSP00000113318.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000122040Re-query CCDS DB by Protein ID:ENSMUSP00000113318
Original member Current member NCBI NM_001048220.2 NP_001041685.1 Accepted alive Link to Nucleotide Sequence:NM_001048220.2Link to Protein Sequence:NP_001041685.1Re-query CCDS DB by Nucleotide ID:NM_001048220Re-query CCDS DB by Protein ID:NP_001041685Link to BLAST:NP_001041685.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001041685.1 949 Q66X03-1 949 99.7893% 0 2

Chromosomal Locations for CCDS 39845.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 26550812 26551082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 26557230 26558811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 26562446 26562610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 26564840 26565007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 26567833 26568003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 26570507 26570677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 26571240 26571410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 26573803 26573953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2850 nt):
ATGATGGACTCATCTGGGTATGGCTTGCTGCAGTATTTGCAAAAGCTCAGTGATGAAGAGTTCCAGAGAT
TTAAAGAACATCTCAGGAAAGAGCCAGAGAAATTTAAACTTAAACCTATCTCCTGGACTAAGATCAAAAA
CACTTCCAAAGAAGACCTGGTAATGCAATTGTACACACATTATCCAGGAAAGGCATGGGATATGGTGTTG
AGCCTGTTTCTACAGGTCAATCGGGAAGACCTCTCAACCATGGCTCAGACAGAAAGGAGAGATAAACAAA
CTAAATACAAAGAGTTTATGAAGAATACATTTCAGCACATATGGACAATGGAGACCAACACTTATATACC
TGATAGAAGCTACCACGAATTTATAGAAGTCCAGTACAGAGCATTGCAGGACATATTTGATTGTGAGTCA
GAGCCAGTCACTGTAGTTGTATCAGGTTCTAGAGGAGGAGGTAAAACTACTTTCTTAAGAAAAGCAATGT
TGGATTGGGCATCAAGAAATTTACTGCAGAACCGATTTCAATATGTTTTCTACTTCTCCGTCTTCTCACT
TAACAATATCACAGAGTTAAGCTTAGCTGAGCTTATCTCAAGTACGTTGCCTGAATCTTCAGAGACAGTG
GATGATATTTTATCTGATCCAAAAAGAATCTTGTTTATCCTGGATGGATTTGATTACCTGAAATTTGACT
TGGAACTCAGGACAAACCTGTGCAATGACTGGAGGAAGAAGCTGCCAATACAAATTGTCTTGAGTAGTTT
GCTACAGAAAATAATGCTCCCAGAATGTTCTCTGCTCCTTGAATTGGGAAATGCAAGTCTTTCAAACATT
ATTCCTTTGCTGCAATATCCAAGGGAGATAATTATGTCAGGATTCTCTGAACAAACTATAGAAATCTACT
GTGTGTCTTTCTTTAATACCCAGACAGGTGTAGAAATCTTTAAGAATTTAAAGAGCATTAAACCATTGTT
CAATTTATGCCGCTGTCCTCATCTATGCTGGATGATCTGTAGTACTATAAAGTGGCAGTATGAGAGGAGA
GAGGTAGCAAGTCGTTTTGGTCGAACATTAGGACTCCTCTACACAATATTTATGGTTAGCGCATTTAAAT
CAACATATGCCAGGAATCCATCTAAACAGAACAGGGCCCGTATAAGGACCCTATGCACCTTGGCTGTAGA
GGGAATGTGGAAACAGGTATATGTGTTTGACTCTGATGACCTCAGGAGGAATGGGATATCTGAATCAGAT
AAGAAAGTGTGGCTGAGAATGAAATTTCTCCAGAATCAAGGTAGCAACATTGTATTTTATCATTCTACAC
TACAGTGGTACTTTGCTGTGCTGTTCTATTTTCTCCAATACAAAGACACACGTCACCCAGTTATTGGAAA
CCTCGCTCAACTCCTAGGAGAAATCTATGCTCATAAACAGAACCAATGGTTCCACACACGGATATTATTG
TTTGGAATGGCCACTGAGCAAGTTAACTCCTTGCTTGAACCATGCTTTGGCTGTATATCATCCAAGGAGG
TAAGACAGGAAATCATCAGATACATCAAAAGTCTCAGTCAACAAGAATGCAATGAAAAACTGGTGGTGCA
TCCCCAGAATTTGTTTTTCTGTATACTTGACAACCAGGAGGAAAGATTTGTAAGACAATTGATGGATCGA
TTTGAAGAAATGACTGTTGATATTAGTGATGTTGATGATATGTCAGCAACTCCATATTGTCTGCATAGAG
CCCCAAAAGTGAAAAACCTTCACCTGCATATACAAAAGAGAGTTTTTTTAGAAATCCATGATCCAGAATA
TGGTGACTTAGAACTCTTTAAACTCGACCAAAAGTGTTCCTTCACGACTAACTTTGGAGATGGTTTATTA
TTTTGCACATTTCTTCACCTACCTCACCTGAAATACATGAACCTGTATGGCACTAATCTCTCTAATGATG
CAGTTGAGAGGCTGTGCTCAGCTCTGAAATTTTCAACATGTGGAGTGGAGGAGCTGTTGTTGGGAAAATG
TGACATATCAAGTGAGGCTTGTGGCATAATTGCAGCTTCCCTTATCAATTCTGAGGTGAAACATCTCTCA
TTGGTTGAAAATCCCTTGAAGAACAAAGGAGTGATGTCACTGTGTGAAATGCTGAAGGATCCAAGCTGTG
TCCTGGAATCACTGATGTTGTCTTACTGCTGTCTCACATTCATTGCCTGTGGACATCTCTATGAAGCTCT
TTTGAGCAATGAACACCTCTCTCTGCTTGATCTGGGGTCAAATTTCCTGGAAGACACTGGAGTGAACCTT
CTGTGTGAAGCTTTGAAAGATCCAAACTGCACCCTCAAGGAGTTATGGTTGCCTGGTTGCTATTTAACTT
CAGAATGTTGTGAAGAGATCTCGGCTGTCCTGACTTGCAATACAAATCTAAAGACCCTGAAACTTGGCAA
CAATAACATACAAGACACTGGTGTCAAACGGTTATGTGAAGCTCTGTGTCATCCTAACTGTGAAATGCAG
TGTCTTGGGTTAGACATGTGTGACTTCACCAGTGACTGTTGTGAAGACCTGGCCTTGGTTCTTACCACCT
GCAACACATTGAAGAGCTTAAACCTTGACTGGAATGCCTTTGACCATTCTGGGCTGGAGATGCTCTGTAA
GGCCTTGAATCACAAAGCCTGTAACCTGGAGGTGCTTGGACTGGACAAATCTTTATTTTCTGAGGAATCA
CAGACATTACTGCAAGCTGTGGAAAAGAAAAATAAAAATCTGAAAGTTTTGCATTTTCCCTGGCTTAAAG
AGGAACTCGAAAAGAGGGGTGTTCGTCTGGTATGGAACAGCAAGAATTGA

Translation (949 aa):
MMDSSGYGLLQYLQKLSDEEFQRFKEHLRKEPEKFKLKPISWTKIKNTSKEDLVMQLYTHYPGKAWDMVL
SLFLQVNREDLSTMAQTERRDKQTKYKEFMKNTFQHIWTMETNTYIPDRSYHEFIEVQYRALQDIFDCES
EPVTVVVSGSRGGGKTTFLRKAMLDWASRNLLQNRFQYVFYFSVFSLNNITELSLAELISSTLPESSETV
DDILSDPKRILFILDGFDYLKFDLELRTNLCNDWRKKLPIQIVLSSLLQKIMLPECSLLLELGNASLSNI
IPLLQYPREIIMSGFSEQTIEIYCVSFFNTQTGVEIFKNLKSIKPLFNLCRCPHLCWMICSTIKWQYERR
EVASRFGRTLGLLYTIFMVSAFKSTYARNPSKQNRARIRTLCTLAVEGMWKQVYVFDSDDLRRNGISESD
KKVWLRMKFLQNQGSNIVFYHSTLQWYFAVLFYFLQYKDTRHPVIGNLAQLLGEIYAHKQNQWFHTRILL
FGMATEQVNSLLEPCFGCISSKEVRQEIIRYIKSLSQQECNEKLVVHPQNLFFCILDNQEERFVRQLMDR
FEEMTVDISDVDDMSATPYCLHRAPKVKNLHLHIQKRVFLEIHDPEYGDLELFKLDQKCSFTTNFGDGLL
FCTFLHLPHLKYMNLYGTNLSNDAVERLCSALKFSTCGVEELLLGKCDISSEACGIIAASLINSEVKHLS
LVENPLKNKGVMSLCEMLKDPSCVLESLMLSYCCLTFIACGHLYEALLSNEHLSLLDLGSNFLEDTGVNL
LCEALKDPNCTLKELWLPGCYLTSECCEEISAVLTCNTNLKTLKLGNNNIQDTGVKRLCEALCHPNCEMQ
CLGLDMCDFTSDCCEDLALVLTTCNTLKSLNLDWNAFDHSGLEMLCKALNHKACNLEVLGLDKSLFSEES
QTLLQAVEKKNKNLKVLHFPWLKEELEKRGVRLVWNSKN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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